Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SMARCA1P28370 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC21.2■□□□□ 0.98
SMARCA1P28370 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
SMARCA1P28370 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
SMARCA1P28370 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SMARCA1P28370 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
SMARCA1P28370 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SMARCA1P28370 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
SMARCA1P28370 PCED1CP-201ENST00000419887 785 ntBASIC21.2■□□□□ 0.98
SMARCA1P28370 CNP-204ENST00000472031 1019 ntTSL 2 BASIC21.2■□□□□ 0.98
SMARCA1P28370 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC21.2■□□□□ 0.98
SMARCA1P28370 TEN1-204ENST00000588202 862 ntTSL 3 BASIC21.2■□□□□ 0.98
SMARCA1P28370 WDR6-223ENST00000627177 207 ntTSL 2 BASIC21.2■□□□□ 0.98
SMARCA1P28370 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC21.2■□□□□ 0.98
SMARCA1P28370 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SMARCA1P28370 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SMARCA1P28370 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SMARCA1P28370 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCA1P28370 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCA1P28370 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCA1P28370 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCA1P28370 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC21.19■□□□□ 0.98
SMARCA1P28370 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC21.19■□□□□ 0.98
SMARCA1P28370 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCA1P28370 AL645929.1-201ENST00000420084 975 ntBASIC21.19■□□□□ 0.98
SMARCA1P28370 KRT18P48-201ENST00000434763 852 ntBASIC21.19■□□□□ 0.98
SMARCA1P28370 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC21.19■□□□□ 0.98
SMARCA1P28370 NAA38-203ENST00000575071 553 ntTSL 2 BASIC21.19■□□□□ 0.98
SMARCA1P28370 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC21.19■□□□□ 0.98
SMARCA1P28370 AC091076.1-201ENST00000610741 619 ntBASIC21.19■□□□□ 0.98
SMARCA1P28370 AP000550.4-202ENST00000639755 178 ntBASIC21.19■□□□□ 0.98
SMARCA1P28370 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC21.19■□□□□ 0.98
SMARCA1P28370 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC21.19■□□□□ 0.98
SMARCA1P28370 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCA1P28370 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCA1P28370 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCA1P28370 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCA1P28370 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCA1P28370 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCA1P28370 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCA1P28370 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
SMARCA1P28370 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCA1P28370 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.19■□□□□ 0.98
SMARCA1P28370 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCA1P28370 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCA1P28370 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCA1P28370 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCA1P28370 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCA1P28370 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC21.18■□□□□ 0.98
SMARCA1P28370 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SMARCA1P28370 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.18■□□□□ 0.98
SMARCA1P28370 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMARCA1P28370 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC21.18■□□□□ 0.98
SMARCA1P28370 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
SMARCA1P28370 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SMARCA1P28370 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMARCA1P28370 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
SMARCA1P28370 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC21.18■□□□□ 0.98
SMARCA1P28370 HES2-202ENST00000377836 507 ntTSL 2 BASIC21.18■□□□□ 0.98
SMARCA1P28370 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMARCA1P28370 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SMARCA1P28370 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC21.18■□□□□ 0.98
SMARCA1P28370 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC21.18■□□□□ 0.98
SMARCA1P28370 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC21.18■□□□□ 0.98
SMARCA1P28370 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMARCA1P28370 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMARCA1P28370 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC21.18■□□□□ 0.98
SMARCA1P28370 TK1-205ENST00000590862 642 ntTSL 3 BASIC21.18■□□□□ 0.98
SMARCA1P28370 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SMARCA1P28370 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMARCA1P28370 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC21.18■□□□□ 0.98
SMARCA1P28370 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC21.18■□□□□ 0.98
SMARCA1P28370 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMARCA1P28370 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
SMARCA1P28370 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC21.18■□□□□ 0.98
SMARCA1P28370 AC087289.5-201ENST00000586076 3175 ntBASIC21.17■□□□□ 0.98
SMARCA1P28370 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
SMARCA1P28370 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC21.17■□□□□ 0.98
SMARCA1P28370 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCA1P28370 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCA1P28370 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCA1P28370 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCA1P28370 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC21.17■□□□□ 0.98
SMARCA1P28370 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC21.17■□□□□ 0.98
SMARCA1P28370 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.17■□□□□ 0.98
SMARCA1P28370 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCA1P28370 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCA1P28370 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCA1P28370 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC21.17■□□□□ 0.98
SMARCA1P28370 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC21.17■□□□□ 0.98
SMARCA1P28370 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCA1P28370 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCA1P28370 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA1P28370 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC21.16■□□□□ 0.98
SMARCA1P28370 AC004408.2-201ENST00000623613 2777 ntBASIC21.16■□□□□ 0.98
SMARCA1P28370 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA1P28370 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
SMARCA1P28370 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA1P28370 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA1P28370 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms