Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL9A1P20849 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
COL9A1P20849 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL9A1P20849 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19■□□□□ 0.63
COL9A1P20849 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL9A1P20849 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19■□□□□ 0.63
COL9A1P20849 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
COL9A1P20849 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19■□□□□ 0.63
COL9A1P20849 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL9A1P20849 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL9A1P20849 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
COL9A1P20849 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
COL9A1P20849 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL9A1P20849 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL9A1P20849 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC19■□□□□ 0.63
COL9A1P20849 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19■□□□□ 0.63
COL9A1P20849 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL9A1P20849 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC19■□□□□ 0.63
COL9A1P20849 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC19■□□□□ 0.63
COL9A1P20849 PARP8-218ENST00000513738 596 ntTSL 4 BASIC19■□□□□ 0.63
COL9A1P20849 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL9A1P20849 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19■□□□□ 0.63
COL9A1P20849 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC19■□□□□ 0.63
COL9A1P20849 MIR4469-201ENST00000583919 79 ntBASIC19■□□□□ 0.63
COL9A1P20849 AC005332.3-201ENST00000589904 676 ntBASIC19■□□□□ 0.63
COL9A1P20849 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19■□□□□ 0.63
COL9A1P20849 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19■□□□□ 0.63
COL9A1P20849 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
COL9A1P20849 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
COL9A1P20849 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19■□□□□ 0.63
COL9A1P20849 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
COL9A1P20849 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.99■□□□□ 0.63
COL9A1P20849 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.99■□□□□ 0.63
COL9A1P20849 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL9A1P20849 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL9A1P20849 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL9A1P20849 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL9A1P20849 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.99■□□□□ 0.63
COL9A1P20849 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL9A1P20849 AC007967.2-201ENST00000432613 625 ntBASIC18.99■□□□□ 0.63
COL9A1P20849 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC18.99■□□□□ 0.63
COL9A1P20849 MEIS3P1-201ENST00000495167 958 ntBASIC18.99■□□□□ 0.63
COL9A1P20849 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL9A1P20849 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC18.99■□□□□ 0.63
COL9A1P20849 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.99■□□□□ 0.63
COL9A1P20849 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.99■□□□□ 0.63
COL9A1P20849 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL9A1P20849 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC18.99■□□□□ 0.63
COL9A1P20849 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.99■□□□□ 0.63
COL9A1P20849 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL9A1P20849 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
COL9A1P20849 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL9A1P20849 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
COL9A1P20849 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.98■□□□□ 0.63
COL9A1P20849 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL9A1P20849 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL9A1P20849 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.98■□□□□ 0.63
COL9A1P20849 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL9A1P20849 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL9A1P20849 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
COL9A1P20849 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.98■□□□□ 0.63
COL9A1P20849 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL9A1P20849 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL9A1P20849 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
COL9A1P20849 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL9A1P20849 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL9A1P20849 GAPDHP21-201ENST00000450301 1010 ntBASIC18.98■□□□□ 0.63
COL9A1P20849 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.98■□□□□ 0.63
COL9A1P20849 MIR5100-201ENST00000579544 119 ntBASIC18.98■□□□□ 0.63
COL9A1P20849 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL9A1P20849 Z99916.3-201ENST00000623422 1080 ntBASIC18.98■□□□□ 0.63
COL9A1P20849 AL157888.1-201ENST00000631930 593 ntBASIC18.98■□□□□ 0.63
COL9A1P20849 Z82202.1-201ENST00000623446 1880 ntBASIC18.98■□□□□ 0.63
COL9A1P20849 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL9A1P20849 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.98■□□□□ 0.63
COL9A1P20849 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC18.98■□□□□ 0.63
COL9A1P20849 TREX1-205ENST00000625293 1783 ntBASIC18.98■□□□□ 0.63
COL9A1P20849 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.98■□□□□ 0.63
COL9A1P20849 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL9A1P20849 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL9A1P20849 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.98■□□□□ 0.63
COL9A1P20849 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL9A1P20849 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.98■□□□□ 0.63
COL9A1P20849 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL9A1P20849 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.97■□□□□ 0.63
COL9A1P20849 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL9A1P20849 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL9A1P20849 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL9A1P20849 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
COL9A1P20849 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
COL9A1P20849 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL9A1P20849 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL9A1P20849 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL9A1P20849 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL9A1P20849 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
COL9A1P20849 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.97■□□□□ 0.63
COL9A1P20849 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.97■□□□□ 0.63
COL9A1P20849 YBX1P5-201ENST00000509441 847 ntBASIC18.97■□□□□ 0.63
COL9A1P20849 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC18.97■□□□□ 0.63
COL9A1P20849 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms