Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
MSH3P20585 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.42■□□□□ 0.54
MSH3P20585 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.42■□□□□ 0.54
MSH3P20585 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MSH3P20585 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
MSH3P20585 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.42■□□□□ 0.54
MSH3P20585 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
MSH3P20585 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MSH3P20585 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MSH3P20585 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.42■□□□□ 0.54
MSH3P20585 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.42■□□□□ 0.54
MSH3P20585 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.42■□□□□ 0.54
MSH3P20585 KRT18P23-201ENST00000435622 1283 ntBASIC18.42■□□□□ 0.54
MSH3P20585 BX664615.1-201ENST00000443558 458 ntBASIC18.42■□□□□ 0.54
MSH3P20585 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.42■□□□□ 0.54
MSH3P20585 NEK4P2-201ENST00000580004 1012 ntBASIC18.42■□□□□ 0.54
MSH3P20585 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.42■□□□□ 0.54
MSH3P20585 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC18.42■□□□□ 0.54
MSH3P20585 AC092865.7-201ENST00000641832 219 ntBASIC18.42■□□□□ 0.54
MSH3P20585 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MSH3P20585 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MSH3P20585 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
MSH3P20585 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
MSH3P20585 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.42■□□□□ 0.54
MSH3P20585 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MSH3P20585 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSH3P20585 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSH3P20585 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSH3P20585 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
MSH3P20585 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
MSH3P20585 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
MSH3P20585 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
MSH3P20585 AC073508.3-201ENST00000619697 1419 ntBASIC18.41■□□□□ 0.54
MSH3P20585 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.41■□□□□ 0.54
MSH3P20585 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.41■□□□□ 0.54
MSH3P20585 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSH3P20585 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
MSH3P20585 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSH3P20585 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSH3P20585 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.41■□□□□ 0.54
MSH3P20585 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSH3P20585 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MSH3P20585 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSH3P20585 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.41■□□□□ 0.54
MSH3P20585 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.41■□□□□ 0.54
MSH3P20585 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.41■□□□□ 0.54
MSH3P20585 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.41■□□□□ 0.54
MSH3P20585 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.41■□□□□ 0.54
MSH3P20585 KRT18P21-201ENST00000515767 1272 ntBASIC18.41■□□□□ 0.54
MSH3P20585 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.41■□□□□ 0.54
MSH3P20585 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.41■□□□□ 0.54
MSH3P20585 AC140113.3-201ENST00000605663 199 ntBASIC18.41■□□□□ 0.54
MSH3P20585 AC112497.1-201ENST00000624824 639 ntBASIC18.41■□□□□ 0.54
MSH3P20585 MYC-208ENST00000641036 567 ntBASIC18.41■□□□□ 0.54
MSH3P20585 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
MSH3P20585 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSH3P20585 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
MSH3P20585 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSH3P20585 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MSH3P20585 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MSH3P20585 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSH3P20585 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSH3P20585 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.41■□□□□ 0.54
MSH3P20585 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MSH3P20585 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSH3P20585 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MSH3P20585 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSH3P20585 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.41■□□□□ 0.54
MSH3P20585 KRT8P7-201ENST00000533003 1432 ntBASIC18.4■□□□□ 0.54
MSH3P20585 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSH3P20585 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSH3P20585 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
MSH3P20585 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MSH3P20585 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSH3P20585 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.4■□□□□ 0.54
MSH3P20585 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSH3P20585 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.4■□□□□ 0.54
MSH3P20585 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
MSH3P20585 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.4■□□□□ 0.54
MSH3P20585 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MSH3P20585 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
MSH3P20585 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
MSH3P20585 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSH3P20585 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
MSH3P20585 RCN1P1-201ENST00000400413 996 ntBASIC18.4■□□□□ 0.54
MSH3P20585 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.4■□□□□ 0.54
MSH3P20585 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.4■□□□□ 0.54
MSH3P20585 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.4■□□□□ 0.54
MSH3P20585 COX11P1-201ENST00000489116 835 ntBASIC18.4■□□□□ 0.54
MSH3P20585 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.4■□□□□ 0.54
MSH3P20585 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.4■□□□□ 0.54
MSH3P20585 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.4■□□□□ 0.54
MSH3P20585 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.4■□□□□ 0.54
MSH3P20585 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
MSH3P20585 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSH3P20585 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSH3P20585 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.4■□□□□ 0.54
MSH3P20585 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSH3P20585 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSH3P20585 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms