Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
COL6A2P12110 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.3■□□□□ 0.52
COL6A2P12110 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
COL6A2P12110 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.3■□□□□ 0.52
COL6A2P12110 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.3■□□□□ 0.52
COL6A2P12110 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
COL6A2P12110 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.3■□□□□ 0.52
COL6A2P12110 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A2P12110 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.3■□□□□ 0.52
COL6A2P12110 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
COL6A2P12110 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A2P12110 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
COL6A2P12110 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A2P12110 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.3■□□□□ 0.52
COL6A2P12110 AC034236.2-201ENST00000606662 1610 ntBASIC18.3■□□□□ 0.52
COL6A2P12110 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.3■□□□□ 0.52
COL6A2P12110 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A2P12110 BCL2-203ENST00000589955 5011 ntBASIC18.3■□□□□ 0.52
COL6A2P12110 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A2P12110 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
COL6A2P12110 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.3■□□□□ 0.52
COL6A2P12110 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A2P12110 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A2P12110 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.3■□□□□ 0.52
COL6A2P12110 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
COL6A2P12110 AC067852.2-201ENST00000590513 2313 ntBASIC18.29■□□□□ 0.52
COL6A2P12110 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.29■□□□□ 0.52
COL6A2P12110 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A2P12110 FLJ13224-201ENST00000313737 1514 ntBASIC18.29■□□□□ 0.52
COL6A2P12110 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A2P12110 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.29■□□□□ 0.52
COL6A2P12110 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.29■□□□□ 0.52
COL6A2P12110 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A2P12110 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.29■□□□□ 0.52
COL6A2P12110 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
COL6A2P12110 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
COL6A2P12110 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.29■□□□□ 0.52
COL6A2P12110 AL023284.2-201ENST00000405850 579 ntBASIC18.29■□□□□ 0.52
COL6A2P12110 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.29■□□□□ 0.52
COL6A2P12110 MCCD1P1-208ENST00000445732 328 ntBASIC18.29■□□□□ 0.52
COL6A2P12110 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.29■□□□□ 0.52
COL6A2P12110 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A2P12110 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.29■□□□□ 0.52
COL6A2P12110 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.29■□□□□ 0.52
COL6A2P12110 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.29■□□□□ 0.52
COL6A2P12110 DGCR10-201ENST00000609839 495 ntBASIC18.29■□□□□ 0.52
COL6A2P12110 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
COL6A2P12110 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A2P12110 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.29■□□□□ 0.52
COL6A2P12110 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A2P12110 AL135905.2-201ENST00000584934 1404 ntBASIC18.29■□□□□ 0.52
COL6A2P12110 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.29■□□□□ 0.52
COL6A2P12110 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.29■□□□□ 0.52
COL6A2P12110 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A2P12110 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A2P12110 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A2P12110 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A2P12110 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A2P12110 GNAS-203ENST00000306120 1878 ntBASIC18.29■□□□□ 0.52
COL6A2P12110 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
COL6A2P12110 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A2P12110 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
COL6A2P12110 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A2P12110 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A2P12110 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.28■□□□□ 0.52
COL6A2P12110 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
COL6A2P12110 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A2P12110 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
COL6A2P12110 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.28■□□□□ 0.52
COL6A2P12110 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.28■□□□□ 0.52
COL6A2P12110 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
COL6A2P12110 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A2P12110 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A2P12110 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A2P12110 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
COL6A2P12110 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A2P12110 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A2P12110 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.28■□□□□ 0.52
COL6A2P12110 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.28■□□□□ 0.52
COL6A2P12110 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.28■□□□□ 0.52
COL6A2P12110 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.28■□□□□ 0.52
COL6A2P12110 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.28■□□□□ 0.52
COL6A2P12110 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.28■□□□□ 0.52
COL6A2P12110 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A2P12110 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A2P12110 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
COL6A2P12110 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A2P12110 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.28■□□□□ 0.52
COL6A2P12110 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A2P12110 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A2P12110 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A2P12110 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A2P12110 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.28■□□□□ 0.52
COL6A2P12110 HCG11-201ENST00000411553 5696 ntBASIC18.28■□□□□ 0.52
COL6A2P12110 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
COL6A2P12110 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.28■□□□□ 0.52
COL6A2P12110 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A2P12110 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A2P12110 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A2P12110 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms