Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC21.83■■□□□ 1.09
HMGB1P09429 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
HMGB1P09429 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
HMGB1P09429 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
HMGB1P09429 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
HMGB1P09429 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
HMGB1P09429 NEK4P2-201ENST00000580004 1012 ntBASIC21.83■■□□□ 1.09
HMGB1P09429 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC21.83■■□□□ 1.09
HMGB1P09429 AC145285.6-201ENST00000604632 637 ntBASIC21.83■■□□□ 1.09
HMGB1P09429 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
HMGB1P09429 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
HMGB1P09429 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
HMGB1P09429 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
HMGB1P09429 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC21.83■■□□□ 1.08
HMGB1P09429 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.08
HMGB1P09429 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
HMGB1P09429 AC009102.3-201ENST00000623118 1491 ntBASIC21.83■■□□□ 1.08
HMGB1P09429 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.08
HMGB1P09429 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
HMGB1P09429 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
HMGB1P09429 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
HMGB1P09429 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HMGB1P09429 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
HMGB1P09429 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
HMGB1P09429 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
HMGB1P09429 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HMGB1P09429 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
HMGB1P09429 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
HMGB1P09429 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HMGB1P09429 AC087499.1-201ENST00000418141 1075 ntBASIC21.82■■□□□ 1.08
HMGB1P09429 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
HMGB1P09429 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC21.82■■□□□ 1.08
HMGB1P09429 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HMGB1P09429 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC21.82■■□□□ 1.08
HMGB1P09429 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
HMGB1P09429 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC21.82■■□□□ 1.08
HMGB1P09429 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HMGB1P09429 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
HMGB1P09429 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
HMGB1P09429 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC21.82■■□□□ 1.08
HMGB1P09429 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB1P09429 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB1P09429 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB1P09429 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC21.81■■□□□ 1.08
HMGB1P09429 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
HMGB1P09429 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB1P09429 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB1P09429 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
HMGB1P09429 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB1P09429 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC21.81■■□□□ 1.08
HMGB1P09429 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC21.81■■□□□ 1.08
HMGB1P09429 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC21.81■■□□□ 1.08
HMGB1P09429 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB1P09429 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB1P09429 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC21.81■■□□□ 1.08
HMGB1P09429 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
HMGB1P09429 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC21.81■■□□□ 1.08
HMGB1P09429 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC21.81■■□□□ 1.08
HMGB1P09429 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB1P09429 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC21.81■■□□□ 1.08
HMGB1P09429 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC21.81■■□□□ 1.08
HMGB1P09429 ETFA-216ENST00000560726 942 ntTSL 3 BASIC21.81■■□□□ 1.08
HMGB1P09429 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC21.81■■□□□ 1.08
HMGB1P09429 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB1P09429 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB1P09429 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB1P09429 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB1P09429 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB1P09429 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB1P09429 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
HMGB1P09429 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB1P09429 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB1P09429 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB1P09429 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB1P09429 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB1P09429 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC21.8■■□□□ 1.08
HMGB1P09429 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC21.8■■□□□ 1.08
HMGB1P09429 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
HMGB1P09429 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB1P09429 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
HMGB1P09429 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB1P09429 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
HMGB1P09429 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB1P09429 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC21.8■■□□□ 1.08
HMGB1P09429 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB1P09429 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.8■■□□□ 1.08
HMGB1P09429 AC093677.2-201ENST00000600169 1863 ntBASIC21.8■■□□□ 1.08
HMGB1P09429 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
HMGB1P09429 GMCL1P1-201ENST00000463439 1581 ntBASIC21.8■■□□□ 1.08
HMGB1P09429 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB1P09429 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB1P09429 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB1P09429 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB1P09429 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB1P09429 TMA16-209ENST00000513272 803 ntTSL 2 BASIC21.8■■□□□ 1.08
HMGB1P09429 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB1P09429 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB1P09429 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
HMGB1P09429 SDHAP2-201ENST00000455183 2001 ntBASIC21.8■■□□□ 1.08
HMGB1P09429 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms