Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VIMP08670 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC18.61■□□□□ 0.57
VIMP08670 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC18.61■□□□□ 0.57
VIMP08670 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VIMP08670 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.61■□□□□ 0.57
VIMP08670 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
VIMP08670 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VIMP08670 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VIMP08670 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.6■□□□□ 0.57
VIMP08670 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
VIMP08670 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VIMP08670 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.6■□□□□ 0.57
VIMP08670 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.6■□□□□ 0.57
VIMP08670 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC18.6■□□□□ 0.57
VIMP08670 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VIMP08670 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VIMP08670 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VIMP08670 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
VIMP08670 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.6■□□□□ 0.57
VIMP08670 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.6■□□□□ 0.57
VIMP08670 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.6■□□□□ 0.57
VIMP08670 TSPY21P-201ENST00000433481 731 ntBASIC18.6■□□□□ 0.57
VIMP08670 CNN2P6-201ENST00000439038 900 ntBASIC18.6■□□□□ 0.57
VIMP08670 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC18.6■□□□□ 0.57
VIMP08670 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC18.6■□□□□ 0.57
VIMP08670 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC18.6■□□□□ 0.57
VIMP08670 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VIMP08670 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
VIMP08670 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.6■□□□□ 0.57
VIMP08670 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
VIMP08670 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.6■□□□□ 0.57
VIMP08670 AL139384.1-201ENST00000612143 3047 ntBASIC18.6■□□□□ 0.57
VIMP08670 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC18.59■□□□□ 0.57
VIMP08670 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VIMP08670 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VIMP08670 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
VIMP08670 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
VIMP08670 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VIMP08670 AC010980.2-201ENST00000587099 1412 ntBASIC18.59■□□□□ 0.57
VIMP08670 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
VIMP08670 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VIMP08670 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.59■□□□□ 0.57
VIMP08670 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
VIMP08670 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.59■□□□□ 0.57
VIMP08670 AC124283.5-201ENST00000624661 1809 ntBASIC18.59■□□□□ 0.57
VIMP08670 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.59■□□□□ 0.57
VIMP08670 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
VIMP08670 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
VIMP08670 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
VIMP08670 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VIMP08670 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.59■□□□□ 0.57
VIMP08670 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VIMP08670 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.59■□□□□ 0.57
VIMP08670 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VIMP08670 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
VIMP08670 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VIMP08670 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VIMP08670 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
VIMP08670 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VIMP08670 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VIMP08670 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VIMP08670 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VIMP08670 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VIMP08670 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VIMP08670 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VIMP08670 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
VIMP08670 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
VIMP08670 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.58■□□□□ 0.57
VIMP08670 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VIMP08670 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VIMP08670 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.58■□□□□ 0.57
VIMP08670 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VIMP08670 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.58■□□□□ 0.56
VIMP08670 CYP2T1P-201ENST00000432607 1285 ntBASIC18.58■□□□□ 0.56
VIMP08670 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.58■□□□□ 0.56
VIMP08670 BID-214ENST00000617586 542 ntTSL 5 BASIC18.58■□□□□ 0.56
VIMP08670 MYC-208ENST00000641036 567 ntBASIC18.58■□□□□ 0.56
VIMP08670 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.58■□□□□ 0.56
VIMP08670 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VIMP08670 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.58■□□□□ 0.56
VIMP08670 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
VIMP08670 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
VIMP08670 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
VIMP08670 MTMR9LP-203ENST00000426597 1545 ntBASIC18.58■□□□□ 0.56
VIMP08670 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
VIMP08670 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.58■□□□□ 0.56
VIMP08670 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VIMP08670 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VIMP08670 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.58■□□□□ 0.56
VIMP08670 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VIMP08670 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
VIMP08670 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VIMP08670 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
VIMP08670 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
VIMP08670 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VIMP08670 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VIMP08670 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
VIMP08670 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VIMP08670 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VIMP08670 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms