Protein–RNA interactions for Protein: P08123

COL1A2, Collagen alpha-2(I) chain, humanhuman

Predictions only

Length 1,366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A2P08123 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC20.28■□□□□ 0.84
COL1A2P08123 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL1A2P08123 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL1A2P08123 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.28■□□□□ 0.84
COL1A2P08123 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
COL1A2P08123 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC20.28■□□□□ 0.84
COL1A2P08123 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL1A2P08123 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL1A2P08123 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL1A2P08123 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC20.27■□□□□ 0.84
COL1A2P08123 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.27■□□□□ 0.84
COL1A2P08123 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL1A2P08123 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL1A2P08123 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL1A2P08123 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL1A2P08123 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.27■□□□□ 0.84
COL1A2P08123 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL1A2P08123 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
COL1A2P08123 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL1A2P08123 AC246785.2-201ENST00000432512 513 ntBASIC20.27■□□□□ 0.84
COL1A2P08123 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL1A2P08123 AC104819.1-201ENST00000504587 486 ntBASIC20.27■□□□□ 0.84
COL1A2P08123 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC20.27■□□□□ 0.84
COL1A2P08123 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL1A2P08123 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC20.27■□□□□ 0.84
COL1A2P08123 Z69720.1-201ENST00000601483 472 ntBASIC20.27■□□□□ 0.84
COL1A2P08123 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL1A2P08123 AC124864.1-201ENST00000623408 392 ntBASIC20.27■□□□□ 0.84
COL1A2P08123 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
COL1A2P08123 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.83
COL1A2P08123 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL1A2P08123 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL1A2P08123 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL1A2P08123 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
COL1A2P08123 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL1A2P08123 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL1A2P08123 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL1A2P08123 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL1A2P08123 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL1A2P08123 VENTXP7-201ENST00000475503 772 ntBASIC20.26■□□□□ 0.83
COL1A2P08123 PNN-202ENST00000553331 656 ntTSL 3 BASIC20.26■□□□□ 0.83
COL1A2P08123 IRF5-214ENST00000613821 595 ntTSL 5 BASIC20.26■□□□□ 0.83
COL1A2P08123 ANKRD20A8P-203ENST00000641373 517 ntBASIC20.26■□□□□ 0.83
COL1A2P08123 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
COL1A2P08123 AL024508.2-201ENST00000607749 1894 ntBASIC20.26■□□□□ 0.83
COL1A2P08123 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
COL1A2P08123 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL1A2P08123 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL1A2P08123 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.26■□□□□ 0.83
COL1A2P08123 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL1A2P08123 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
COL1A2P08123 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
COL1A2P08123 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.25■□□□□ 0.83
COL1A2P08123 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL1A2P08123 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL1A2P08123 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL1A2P08123 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL1A2P08123 TSPY19P-201ENST00000418461 509 ntBASIC20.25■□□□□ 0.83
COL1A2P08123 TSPY18P-201ENST00000441642 509 ntBASIC20.25■□□□□ 0.83
COL1A2P08123 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL1A2P08123 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC20.25■□□□□ 0.83
COL1A2P08123 AC074051.2-201ENST00000565115 352 ntBASIC20.25■□□□□ 0.83
COL1A2P08123 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL1A2P08123 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC20.25■□□□□ 0.83
COL1A2P08123 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC20.25■□□□□ 0.83
COL1A2P08123 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC20.25■□□□□ 0.83
COL1A2P08123 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC20.25■□□□□ 0.83
COL1A2P08123 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC20.25■□□□□ 0.83
COL1A2P08123 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL1A2P08123 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.25■□□□□ 0.83
COL1A2P08123 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC20.25■□□□□ 0.83
COL1A2P08123 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL1A2P08123 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL1A2P08123 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL1A2P08123 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL1A2P08123 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A2P08123 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.24■□□□□ 0.83
COL1A2P08123 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A2P08123 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC20.24■□□□□ 0.83
COL1A2P08123 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
COL1A2P08123 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A2P08123 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
COL1A2P08123 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A2P08123 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC20.24■□□□□ 0.83
COL1A2P08123 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A2P08123 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.24■□□□□ 0.83
COL1A2P08123 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC20.24■□□□□ 0.83
COL1A2P08123 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
COL1A2P08123 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A2P08123 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.24■□□□□ 0.83
COL1A2P08123 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.24■□□□□ 0.83
COL1A2P08123 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC20.24■□□□□ 0.83
COL1A2P08123 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A2P08123 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A2P08123 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A2P08123 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.24■□□□□ 0.83
COL1A2P08123 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A2P08123 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL1A2P08123 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.23■□□□□ 0.83
COL1A2P08123 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms