Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LDB3O75112 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
LDB3O75112 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDB3O75112 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
LDB3O75112 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LDB3O75112 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LDB3O75112 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LDB3O75112 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
LDB3O75112 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.41■□□□□ 0.38
LDB3O75112 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.41■□□□□ 0.38
LDB3O75112 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.41■□□□□ 0.38
LDB3O75112 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
LDB3O75112 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
LDB3O75112 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
LDB3O75112 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LDB3O75112 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
LDB3O75112 MYLKP1-201ENST00000509077 1580 ntBASIC17.41■□□□□ 0.38
LDB3O75112 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.41■□□□□ 0.38
LDB3O75112 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LDB3O75112 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LDB3O75112 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LDB3O75112 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.41■□□□□ 0.38
LDB3O75112 SEC1P-202ENST00000473944 940 ntBASIC17.41■□□□□ 0.38
LDB3O75112 YBX1P2-201ENST00000489612 999 ntBASIC17.41■□□□□ 0.38
LDB3O75112 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.41■□□□□ 0.38
LDB3O75112 GCSHP2-201ENST00000560971 527 ntBASIC17.41■□□□□ 0.38
LDB3O75112 AL441883.1-201ENST00000566170 1045 ntBASIC17.41■□□□□ 0.38
LDB3O75112 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LDB3O75112 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LDB3O75112 MYC-208ENST00000641036 567 ntBASIC17.41■□□□□ 0.38
LDB3O75112 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LDB3O75112 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LDB3O75112 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LDB3O75112 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LDB3O75112 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LDB3O75112 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LDB3O75112 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.41■□□□□ 0.38
LDB3O75112 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.41■□□□□ 0.38
LDB3O75112 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
LDB3O75112 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LDB3O75112 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LDB3O75112 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.4■□□□□ 0.38
LDB3O75112 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LDB3O75112 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDB3O75112 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDB3O75112 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDB3O75112 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDB3O75112 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
LDB3O75112 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDB3O75112 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDB3O75112 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDB3O75112 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDB3O75112 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.4■□□□□ 0.38
LDB3O75112 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
LDB3O75112 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.4■□□□□ 0.38
LDB3O75112 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDB3O75112 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.4■□□□□ 0.38
LDB3O75112 AC104076.2-201ENST00000448912 469 ntBASIC17.4■□□□□ 0.38
LDB3O75112 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.4■□□□□ 0.38
LDB3O75112 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.4■□□□□ 0.38
LDB3O75112 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.4■□□□□ 0.38
LDB3O75112 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17.4■□□□□ 0.38
LDB3O75112 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LDB3O75112 AC011558.1-201ENST00000623459 338 ntBASIC17.4■□□□□ 0.38
LDB3O75112 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.4■□□□□ 0.38
LDB3O75112 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.4■□□□□ 0.38
LDB3O75112 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.4■□□□□ 0.38
LDB3O75112 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDB3O75112 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDB3O75112 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.4■□□□□ 0.38
LDB3O75112 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
LDB3O75112 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.4■□□□□ 0.38
LDB3O75112 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDB3O75112 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.4■□□□□ 0.38
LDB3O75112 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
LDB3O75112 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
LDB3O75112 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.38
LDB3O75112 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
LDB3O75112 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.38
LDB3O75112 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.39■□□□□ 0.38
LDB3O75112 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.38
LDB3O75112 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.39■□□□□ 0.38
LDB3O75112 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
LDB3O75112 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LDB3O75112 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.39■□□□□ 0.37
LDB3O75112 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LDB3O75112 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.39■□□□□ 0.37
LDB3O75112 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LDB3O75112 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
LDB3O75112 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LDB3O75112 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.39■□□□□ 0.37
LDB3O75112 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LDB3O75112 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LDB3O75112 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC17.39■□□□□ 0.37
LDB3O75112 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LDB3O75112 AP000593.1-201ENST00000393668 712 ntBASIC17.39■□□□□ 0.37
LDB3O75112 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LDB3O75112 AK4P3-201ENST00000418260 669 ntBASIC17.39■□□□□ 0.37
LDB3O75112 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.39■□□□□ 0.37
LDB3O75112 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms