Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1BO60663 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1BO60663 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1BO60663 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1BO60663 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1BO60663 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1BO60663 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
LMX1BO60663 AC068880.1-201ENST00000507289 2297 ntBASIC16.3■□□□□ 0.2
LMX1BO60663 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
LMX1BO60663 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
LMX1BO60663 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1BO60663 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1BO60663 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.3■□□□□ 0.2
LMX1BO60663 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1BO60663 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1BO60663 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1BO60663 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC16.29■□□□□ 0.2
LMX1BO60663 AC073508.3-201ENST00000619697 1419 ntBASIC16.29■□□□□ 0.2
LMX1BO60663 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1BO60663 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
LMX1BO60663 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
LMX1BO60663 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1BO60663 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC16.29■□□□□ 0.2
LMX1BO60663 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
LMX1BO60663 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1BO60663 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1BO60663 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
LMX1BO60663 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.29■□□□□ 0.2
LMX1BO60663 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC16.29■□□□□ 0.2
LMX1BO60663 AC004980.1-204ENST00000429707 299 ntBASIC16.29■□□□□ 0.2
LMX1BO60663 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC16.29■□□□□ 0.2
LMX1BO60663 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.29■□□□□ 0.2
LMX1BO60663 C2orf69P3-201ENST00000565542 1120 ntBASIC16.29■□□□□ 0.2
LMX1BO60663 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1BO60663 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1BO60663 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1BO60663 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1BO60663 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1BO60663 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1BO60663 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.29■□□□□ 0.2
LMX1BO60663 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1BO60663 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1BO60663 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC16.29■□□□□ 0.2
LMX1BO60663 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.29■□□□□ 0.2
LMX1BO60663 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
LMX1BO60663 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC16.28■□□□□ 0.2
LMX1BO60663 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
LMX1BO60663 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
LMX1BO60663 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC16.28■□□□□ 0.2
LMX1BO60663 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1BO60663 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1BO60663 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1BO60663 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.28■□□□□ 0.2
LMX1BO60663 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC16.28■□□□□ 0.2
LMX1BO60663 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1BO60663 ABALON-201ENST00000629058 1903 ntBASIC16.28■□□□□ 0.2
LMX1BO60663 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1BO60663 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1BO60663 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1BO60663 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC16.28■□□□□ 0.2
LMX1BO60663 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
LMX1BO60663 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1BO60663 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
LMX1BO60663 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
LMX1BO60663 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC16.28■□□□□ 0.2
LMX1BO60663 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.28■□□□□ 0.2
LMX1BO60663 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1BO60663 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1BO60663 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1BO60663 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1BO60663 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1BO60663 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1BO60663 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1BO60663 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
LMX1BO60663 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1BO60663 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC16.28■□□□□ 0.2
LMX1BO60663 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
LMX1BO60663 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
LMX1BO60663 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1BO60663 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC16.28■□□□□ 0.2
LMX1BO60663 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC16.27■□□□□ 0.2
LMX1BO60663 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LMX1BO60663 NOC2LP2-201ENST00000407594 1944 ntBASIC16.27■□□□□ 0.2
LMX1BO60663 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LMX1BO60663 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
LMX1BO60663 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LMX1BO60663 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
LMX1BO60663 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC16.27■□□□□ 0.2
LMX1BO60663 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
LMX1BO60663 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LMX1BO60663 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.27■□□□□ 0.2
LMX1BO60663 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.27■□□□□ 0.2
LMX1BO60663 PTPA-216ENST00000432651 857 ntTSL 2 BASIC16.27■□□□□ 0.2
LMX1BO60663 AC104076.2-201ENST00000448912 469 ntBASIC16.27■□□□□ 0.2
LMX1BO60663 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LMX1BO60663 AL445675.2-201ENST00000620291 557 ntBASIC16.27■□□□□ 0.2
LMX1BO60663 ABBA01031674.1-201ENST00000635145 728 ntBASIC16.27■□□□□ 0.2
LMX1BO60663 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC16.27■□□□□ 0.2
LMX1BO60663 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LMX1BO60663 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms