Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.51■□□□□ 0.55
LDB2O43679 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.51■□□□□ 0.55
LDB2O43679 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDB2O43679 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.51■□□□□ 0.55
LDB2O43679 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.51■□□□□ 0.55
LDB2O43679 AL162741.1-201ENST00000565563 1558 ntBASIC18.51■□□□□ 0.55
LDB2O43679 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
LDB2O43679 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.51■□□□□ 0.55
LDB2O43679 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDB2O43679 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
LDB2O43679 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
LDB2O43679 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDB2O43679 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDB2O43679 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.5■□□□□ 0.55
LDB2O43679 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDB2O43679 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDB2O43679 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDB2O43679 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.5■□□□□ 0.55
LDB2O43679 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDB2O43679 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LDB2O43679 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDB2O43679 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
LDB2O43679 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDB2O43679 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LDB2O43679 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
LDB2O43679 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
LDB2O43679 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.5■□□□□ 0.55
LDB2O43679 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
LDB2O43679 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
LDB2O43679 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
LDB2O43679 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LDB2O43679 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
LDB2O43679 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.5■□□□□ 0.55
LDB2O43679 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.5■□□□□ 0.55
LDB2O43679 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.5■□□□□ 0.55
LDB2O43679 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.5■□□□□ 0.55
LDB2O43679 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.5■□□□□ 0.55
LDB2O43679 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC18.5■□□□□ 0.55
LDB2O43679 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LDB2O43679 AL138966.2-201ENST00000621997 464 ntBASIC18.5■□□□□ 0.55
LDB2O43679 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
LDB2O43679 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDB2O43679 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDB2O43679 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.5■□□□□ 0.55
LDB2O43679 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDB2O43679 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDB2O43679 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.5■□□□□ 0.55
LDB2O43679 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDB2O43679 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.5■□□□□ 0.55
LDB2O43679 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LDB2O43679 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDB2O43679 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
LDB2O43679 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDB2O43679 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDB2O43679 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDB2O43679 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LDB2O43679 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.49■□□□□ 0.55
LDB2O43679 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.49■□□□□ 0.55
LDB2O43679 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LDB2O43679 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.49■□□□□ 0.55
LDB2O43679 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDB2O43679 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDB2O43679 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.49■□□□□ 0.55
LDB2O43679 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LDB2O43679 SDHAP2-201ENST00000455183 2001 ntBASIC18.49■□□□□ 0.55
LDB2O43679 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.49■□□□□ 0.55
LDB2O43679 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDB2O43679 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
LDB2O43679 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LDB2O43679 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.49■□□□□ 0.55
LDB2O43679 SLC25A3P1-201ENST00000443844 931 ntBASIC18.49■□□□□ 0.55
LDB2O43679 KRT18P21-201ENST00000515767 1272 ntBASIC18.49■□□□□ 0.55
LDB2O43679 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.49■□□□□ 0.55
LDB2O43679 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LDB2O43679 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
LDB2O43679 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDB2O43679 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.49■□□□□ 0.55
LDB2O43679 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDB2O43679 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDB2O43679 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDB2O43679 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDB2O43679 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.49■□□□□ 0.55
LDB2O43679 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.49■□□□□ 0.55
LDB2O43679 ESPNP-201ENST00000270691 2015 ntBASIC18.49■□□□□ 0.55
LDB2O43679 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LDB2O43679 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LDB2O43679 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LDB2O43679 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.49■□□□□ 0.55
LDB2O43679 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.49■□□□□ 0.55
LDB2O43679 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
LDB2O43679 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDB2O43679 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
LDB2O43679 AC135776.1-201ENST00000319817 2481 ntBASIC18.48■□□□□ 0.55
LDB2O43679 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDB2O43679 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDB2O43679 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDB2O43679 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LDB2O43679 AL390961.4-201ENST00000623958 2535 ntBASIC18.48■□□□□ 0.55
LDB2O43679 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.48■□□□□ 0.55
LDB2O43679 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms