Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDX4O14627 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CDX4O14627 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDX4O14627 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDX4O14627 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDX4O14627 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDX4O14627 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.8■□□□□ 0.44
CDX4O14627 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.8■□□□□ 0.44
CDX4O14627 AC113404.2-201ENST00000507884 177 ntBASIC17.8■□□□□ 0.44
CDX4O14627 OR7E14P-202ENST00000530490 1290 ntBASIC17.8■□□□□ 0.44
CDX4O14627 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.8■□□□□ 0.44
CDX4O14627 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC17.8■□□□□ 0.44
CDX4O14627 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.8■□□□□ 0.44
CDX4O14627 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDX4O14627 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.8■□□□□ 0.44
CDX4O14627 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.8■□□□□ 0.44
CDX4O14627 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDX4O14627 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDX4O14627 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDX4O14627 IRX1P1-201ENST00000438849 1838 ntBASIC17.79■□□□□ 0.44
CDX4O14627 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.79■□□□□ 0.44
CDX4O14627 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
CDX4O14627 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CDX4O14627 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDX4O14627 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CDX4O14627 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDX4O14627 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDX4O14627 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDX4O14627 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDX4O14627 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC17.79■□□□□ 0.44
CDX4O14627 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.79■□□□□ 0.44
CDX4O14627 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.79■□□□□ 0.44
CDX4O14627 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.79■□□□□ 0.44
CDX4O14627 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDX4O14627 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC17.79■□□□□ 0.44
CDX4O14627 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDX4O14627 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CDX4O14627 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDX4O14627 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.79■□□□□ 0.44
CDX4O14627 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDX4O14627 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC17.79■□□□□ 0.44
CDX4O14627 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDX4O14627 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.79■□□□□ 0.44
CDX4O14627 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.79■□□□□ 0.44
CDX4O14627 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDX4O14627 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.78■□□□□ 0.44
CDX4O14627 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDX4O14627 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CDX4O14627 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDX4O14627 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDX4O14627 AL163051.1-201ENST00000569214 1512 ntBASIC17.78■□□□□ 0.44
CDX4O14627 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDX4O14627 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDX4O14627 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDX4O14627 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDX4O14627 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDX4O14627 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.78■□□□□ 0.44
CDX4O14627 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.78■□□□□ 0.44
CDX4O14627 ABCD1P5-201ENST00000445663 754 ntBASIC17.78■□□□□ 0.44
CDX4O14627 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
CDX4O14627 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.78■□□□□ 0.44
CDX4O14627 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC17.78■□□□□ 0.44
CDX4O14627 AC011467.2-201ENST00000598425 242 ntBASIC17.78■□□□□ 0.44
CDX4O14627 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CDX4O14627 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.78■□□□□ 0.44
CDX4O14627 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDX4O14627 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDX4O14627 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.78■□□□□ 0.44
CDX4O14627 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CDX4O14627 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDX4O14627 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDX4O14627 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
CDX4O14627 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.77■□□□□ 0.44
CDX4O14627 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.77■□□□□ 0.44
CDX4O14627 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC17.77■□□□□ 0.44
CDX4O14627 AC007375.3-201ENST00000600936 2314 ntBASIC17.77■□□□□ 0.44
CDX4O14627 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDX4O14627 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDX4O14627 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.77■□□□□ 0.44
CDX4O14627 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
CDX4O14627 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDX4O14627 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
CDX4O14627 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.77■□□□□ 0.44
CDX4O14627 AC004832.2-201ENST00000426397 482 ntBASIC17.77■□□□□ 0.44
CDX4O14627 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.77■□□□□ 0.44
CDX4O14627 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDX4O14627 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CDX4O14627 AC025062.2-201ENST00000605477 670 ntBASIC17.77■□□□□ 0.44
CDX4O14627 AL138831.2-201ENST00000606564 490 ntBASIC17.77■□□□□ 0.44
CDX4O14627 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CDX4O14627 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDX4O14627 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDX4O14627 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.77■□□□□ 0.44
CDX4O14627 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC17.77■□□□□ 0.43
CDX4O14627 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
CDX4O14627 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CDX4O14627 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC17.77■□□□□ 0.43
CDX4O14627 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDX4O14627 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDX4O14627 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms