Protein–RNA interactions for Protein: A5YKK6

CNOT1, CCR4-NOT transcription complex subunit 1, humanhuman

Known RBP Predictions only

Length 2,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1A5YKK6 SNHG9-202ENST00000564014 471 ntBASIC17.64■□□□□ 0.41
CNOT1A5YKK6 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
CNOT1A5YKK6 AC025062.2-201ENST00000605477 670 ntBASIC17.64■□□□□ 0.41
CNOT1A5YKK6 AL138831.2-201ENST00000606564 490 ntBASIC17.64■□□□□ 0.41
CNOT1A5YKK6 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CNOT1A5YKK6 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CNOT1A5YKK6 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CNOT1A5YKK6 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
CNOT1A5YKK6 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CNOT1A5YKK6 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.64■□□□□ 0.41
CNOT1A5YKK6 ALG1L5P-201ENST00000482043 771 ntBASIC17.64■□□□□ 0.41
CNOT1A5YKK6 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CNOT1A5YKK6 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.64■□□□□ 0.41
CNOT1A5YKK6 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.64■□□□□ 0.41
CNOT1A5YKK6 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CNOT1A5YKK6 AL078644.1-201ENST00000609881 752 ntBASIC17.64■□□□□ 0.41
CNOT1A5YKK6 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CNOT1A5YKK6 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNOT1A5YKK6 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNOT1A5YKK6 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CNOT1A5YKK6 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNOT1A5YKK6 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC17.63■□□□□ 0.41
CNOT1A5YKK6 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
CNOT1A5YKK6 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.63■□□□□ 0.41
CNOT1A5YKK6 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CNOT1A5YKK6 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNOT1A5YKK6 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.63■□□□□ 0.41
CNOT1A5YKK6 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNOT1A5YKK6 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.63■□□□□ 0.41
CNOT1A5YKK6 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNOT1A5YKK6 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNOT1A5YKK6 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.63■□□□□ 0.41
CNOT1A5YKK6 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
CNOT1A5YKK6 AL512353.2-201ENST00000448759 1962 ntBASIC17.63■□□□□ 0.41
CNOT1A5YKK6 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNOT1A5YKK6 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CNOT1A5YKK6 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNOT1A5YKK6 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 KRT18P2-201ENST00000447938 1258 ntBASIC17.62■□□□□ 0.41
CNOT1A5YKK6 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 INTS4P1-201ENST00000438455 1935 ntBASIC17.62■□□□□ 0.41
CNOT1A5YKK6 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
CNOT1A5YKK6 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 AC092910.1-201ENST00000482027 1129 ntBASIC17.61■□□□□ 0.41
CNOT1A5YKK6 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 AJ011932.1-201ENST00000621707 465 ntBASIC17.61■□□□□ 0.41
CNOT1A5YKK6 AL035252.4-201ENST00000624174 288 ntBASIC17.61■□□□□ 0.41
CNOT1A5YKK6 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 AC093512.1-201ENST00000617969 520 ntBASIC17.61■□□□□ 0.41
CNOT1A5YKK6 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CNOT1A5YKK6 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms