Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 AL031284.1-201ENST00000419297 478 ntBASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 AF186996.4-201ENST00000467186 377 ntBASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 RNPS1P1-201ENST00000507437 918 ntBASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA1Q9Y5H4 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHGA1Q9Y5H4 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.77■□□□□ 0.44
PCDHGA1Q9Y5H4 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
PCDHGA1Q9Y5H4 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHGA1Q9Y5H4 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHGA1Q9Y5H4 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHGA1Q9Y5H4 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.77■□□□□ 0.44
PCDHGA1Q9Y5H4 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHGA1Q9Y5H4 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.77■□□□□ 0.44
PCDHGA1Q9Y5H4 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.77■□□□□ 0.44
PCDHGA1Q9Y5H4 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.77■□□□□ 0.44
PCDHGA1Q9Y5H4 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.77■□□□□ 0.44
PCDHGA1Q9Y5H4 AL591684.3-201ENST00000605187 298 ntBASIC17.77■□□□□ 0.44
PCDHGA1Q9Y5H4 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHGA1Q9Y5H4 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHGA1Q9Y5H4 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC17.77■□□□□ 0.44
PCDHGA1Q9Y5H4 AIRN-201ENST00000601203 4374 ntBASIC17.77■□□□□ 0.43
PCDHGA1Q9Y5H4 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PCDHGA1Q9Y5H4 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PCDHGA1Q9Y5H4 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
PCDHGA1Q9Y5H4 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PCDHGA1Q9Y5H4 TEX21P-204ENST00000641479 1693 ntBASIC17.77■□□□□ 0.43
PCDHGA1Q9Y5H4 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC17.77■□□□□ 0.43
PCDHGA1Q9Y5H4 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC17.76■□□□□ 0.43
PCDHGA1Q9Y5H4 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms