Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VSX1Q9NZR4 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VSX1Q9NZR4 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VSX1Q9NZR4 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VSX1Q9NZR4 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VSX1Q9NZR4 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VSX1Q9NZR4 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
VSX1Q9NZR4 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VSX1Q9NZR4 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
VSX1Q9NZR4 MIR564-202ENST00000385049 94 ntBASIC16.57■□□□□ 0.24
VSX1Q9NZR4 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VSX1Q9NZR4 AC097488.1-201ENST00000507834 756 ntBASIC16.57■□□□□ 0.24
VSX1Q9NZR4 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC16.57■□□□□ 0.24
VSX1Q9NZR4 REXO1L10P-201ENST00000615707 1290 ntBASIC16.57■□□□□ 0.24
VSX1Q9NZR4 REXO1L12P-201ENST00000622156 912 ntBASIC16.57■□□□□ 0.24
VSX1Q9NZR4 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VSX1Q9NZR4 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
VSX1Q9NZR4 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
VSX1Q9NZR4 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VSX1Q9NZR4 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
VSX1Q9NZR4 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
VSX1Q9NZR4 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
VSX1Q9NZR4 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VSX1Q9NZR4 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VSX1Q9NZR4 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VSX1Q9NZR4 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.57■□□□□ 0.24
VSX1Q9NZR4 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VSX1Q9NZR4 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 MYLKP1-201ENST00000509077 1580 ntBASIC16.56■□□□□ 0.24
VSX1Q9NZR4 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 AC007613.1-201ENST00000572811 2597 ntBASIC16.56■□□□□ 0.24
VSX1Q9NZR4 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 BUB3-202ENST00000368859 667 ntTSL 3 BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 MCCD1P1-208ENST00000445732 328 ntBASIC16.56■□□□□ 0.24
VSX1Q9NZR4 PENK-204ENST00000518770 863 ntTSL 2 BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 REXO2-216ENST00000544196 452 ntTSL 3 BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 DECR2-212ENST00000627716 352 ntTSL 2 BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 GPAT2P1-201ENST00000444924 1672 ntBASIC16.56■□□□□ 0.24
VSX1Q9NZR4 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
VSX1Q9NZR4 NOC2LP1-202ENST00000452600 2235 ntBASIC16.55■□□□□ 0.24
VSX1Q9NZR4 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 MME-217ENST00000616757 1315 ntTSL 5 BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms