Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIME1Q9H400 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.26■□□□□ 0.19
LIME1Q9H400 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIME1Q9H400 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIME1Q9H400 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIME1Q9H400 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIME1Q9H400 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC16.26■□□□□ 0.19
LIME1Q9H400 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIME1Q9H400 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
LIME1Q9H400 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC16.26■□□□□ 0.19
LIME1Q9H400 BX276092.5-203ENST00000456199 560 ntBASIC16.26■□□□□ 0.19
LIME1Q9H400 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.26■□□□□ 0.19
LIME1Q9H400 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.26■□□□□ 0.19
LIME1Q9H400 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC16.26■□□□□ 0.19
LIME1Q9H400 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.26■□□□□ 0.19
LIME1Q9H400 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
LIME1Q9H400 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC16.26■□□□□ 0.19
LIME1Q9H400 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LIME1Q9H400 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.26■□□□□ 0.19
LIME1Q9H400 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
LIME1Q9H400 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIME1Q9H400 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC16.26■□□□□ 0.19
LIME1Q9H400 AC006333.2-201ENST00000607957 2099 ntBASIC16.26■□□□□ 0.19
LIME1Q9H400 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIME1Q9H400 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
LIME1Q9H400 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIME1Q9H400 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIME1Q9H400 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LIME1Q9H400 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC16.26■□□□□ 0.19
LIME1Q9H400 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
LIME1Q9H400 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LIME1Q9H400 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIME1Q9H400 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIME1Q9H400 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC16.26■□□□□ 0.19
LIME1Q9H400 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.25■□□□□ 0.19
LIME1Q9H400 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIME1Q9H400 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIME1Q9H400 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LIME1Q9H400 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC16.25■□□□□ 0.19
LIME1Q9H400 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC16.25■□□□□ 0.19
LIME1Q9H400 TEX21P-204ENST00000641479 1693 ntBASIC16.25■□□□□ 0.19
LIME1Q9H400 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC16.25■□□□□ 0.19
LIME1Q9H400 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
LIME1Q9H400 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
LIME1Q9H400 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIME1Q9H400 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIME1Q9H400 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIME1Q9H400 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC16.25■□□□□ 0.19
LIME1Q9H400 EMBP1-201ENST00000458200 901 ntBASIC16.25■□□□□ 0.19
LIME1Q9H400 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIME1Q9H400 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.25■□□□□ 0.19
LIME1Q9H400 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.25■□□□□ 0.19
LIME1Q9H400 AL121672.3-201ENST00000608644 468 ntBASIC16.25■□□□□ 0.19
LIME1Q9H400 GPALPP1-207ENST00000611650 899 ntBASIC16.25■□□□□ 0.19
LIME1Q9H400 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
LIME1Q9H400 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LIME1Q9H400 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
LIME1Q9H400 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIME1Q9H400 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LIME1Q9H400 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC16.25■□□□□ 0.19
LIME1Q9H400 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
LIME1Q9H400 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.25■□□□□ 0.19
LIME1Q9H400 AC120498.9-201ENST00000339021 3867 ntBASIC16.25■□□□□ 0.19
LIME1Q9H400 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIME1Q9H400 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LIME1Q9H400 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIME1Q9H400 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LIME1Q9H400 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC16.25■□□□□ 0.19
LIME1Q9H400 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIME1Q9H400 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
LIME1Q9H400 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIME1Q9H400 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIME1Q9H400 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIME1Q9H400 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIME1Q9H400 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.24■□□□□ 0.19
LIME1Q9H400 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIME1Q9H400 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIME1Q9H400 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LIME1Q9H400 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIME1Q9H400 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.24■□□□□ 0.19
LIME1Q9H400 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LIME1Q9H400 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.24■□□□□ 0.19
LIME1Q9H400 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC16.24■□□□□ 0.19
LIME1Q9H400 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC16.24■□□□□ 0.19
LIME1Q9H400 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC16.24■□□□□ 0.19
LIME1Q9H400 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LIME1Q9H400 ILF2-202ENST00000368681 726 ntTSL 2 BASIC16.24■□□□□ 0.19
LIME1Q9H400 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC16.24■□□□□ 0.19
LIME1Q9H400 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.24■□□□□ 0.19
LIME1Q9H400 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16.24■□□□□ 0.19
LIME1Q9H400 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC16.24■□□□□ 0.19
LIME1Q9H400 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.24■□□□□ 0.19
LIME1Q9H400 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LIME1Q9H400 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC16.24■□□□□ 0.19
LIME1Q9H400 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC16.24■□□□□ 0.19
LIME1Q9H400 AP002414.4-201ENST00000589764 1148 ntBASIC16.24■□□□□ 0.19
LIME1Q9H400 IFNL4P1-201ENST00000607083 540 ntBASIC16.24■□□□□ 0.19
LIME1Q9H400 AL732292.2-201ENST00000609649 430 ntBASIC16.24■□□□□ 0.19
LIME1Q9H400 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.24■□□□□ 0.19
LIME1Q9H400 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms