Protein–RNA interactions for Protein: Q9H2S5

RNF39, RING finger protein 39, humanhuman

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39Q9H2S5 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
RNF39Q9H2S5 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
RNF39Q9H2S5 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
RNF39Q9H2S5 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC20.6■□□□□ 0.89
RNF39Q9H2S5 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.59■□□□□ 0.89
RNF39Q9H2S5 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.59■□□□□ 0.89
RNF39Q9H2S5 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.59■□□□□ 0.89
RNF39Q9H2S5 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF39Q9H2S5 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.59■□□□□ 0.89
RNF39Q9H2S5 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.59■□□□□ 0.89
RNF39Q9H2S5 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF39Q9H2S5 ANKRD20A18P-201ENST00000359341 492 ntBASIC20.59■□□□□ 0.89
RNF39Q9H2S5 AL031133.1-201ENST00000406807 723 ntBASIC20.59■□□□□ 0.89
RNF39Q9H2S5 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC20.59■□□□□ 0.89
RNF39Q9H2S5 SAPCD2P2-201ENST00000431719 1174 ntBASIC20.59■□□□□ 0.89
RNF39Q9H2S5 AC009947.2-201ENST00000444014 672 ntBASIC20.59■□□□□ 0.89
RNF39Q9H2S5 ZNF736P8Y-201ENST00000451913 669 ntBASIC20.59■□□□□ 0.89
RNF39Q9H2S5 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.59■□□□□ 0.89
RNF39Q9H2S5 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.59■□□□□ 0.89
RNF39Q9H2S5 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF39Q9H2S5 SNORA59B-202ENST00000578183 701 ntBASIC20.59■□□□□ 0.89
RNF39Q9H2S5 AC140113.3-201ENST00000605663 199 ntBASIC20.59■□□□□ 0.89
RNF39Q9H2S5 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.59■□□□□ 0.89
RNF39Q9H2S5 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC20.59■□□□□ 0.89
RNF39Q9H2S5 FO681491.1-202ENST00000623392 737 ntBASIC20.59■□□□□ 0.89
RNF39Q9H2S5 AC020978.9-201ENST00000624380 1141 ntBASIC20.59■□□□□ 0.89
RNF39Q9H2S5 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF39Q9H2S5 HVCN1-209ENST00000620084 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF39Q9H2S5 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF39Q9H2S5 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF39Q9H2S5 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF39Q9H2S5 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
RNF39Q9H2S5 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RNF39Q9H2S5 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
RNF39Q9H2S5 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RNF39Q9H2S5 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RNF39Q9H2S5 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RNF39Q9H2S5 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RNF39Q9H2S5 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RNF39Q9H2S5 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RNF39Q9H2S5 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RNF39Q9H2S5 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.58■□□□□ 0.89
RNF39Q9H2S5 PHB2-202ENST00000440277 996 ntTSL 5 BASIC20.58■□□□□ 0.89
RNF39Q9H2S5 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.58■□□□□ 0.89
RNF39Q9H2S5 LIF-AS1-201ENST00000447565 808 ntTSL 3 BASIC20.58■□□□□ 0.89
RNF39Q9H2S5 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RNF39Q9H2S5 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RNF39Q9H2S5 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RNF39Q9H2S5 AC078899.4-201ENST00000593952 1113 ntBASIC20.58■□□□□ 0.89
RNF39Q9H2S5 TPT1-AS1-221ENST00000618947 520 ntTSL 3 BASIC20.58■□□□□ 0.89
RNF39Q9H2S5 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RNF39Q9H2S5 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.58■□□□□ 0.89
RNF39Q9H2S5 AC073130.3-201ENST00000624389 2278 ntBASIC20.58■□□□□ 0.88
RNF39Q9H2S5 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
RNF39Q9H2S5 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.58■□□□□ 0.88
RNF39Q9H2S5 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC20.58■□□□□ 0.88
RNF39Q9H2S5 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.58■□□□□ 0.88
RNF39Q9H2S5 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.58■□□□□ 0.88
RNF39Q9H2S5 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
RNF39Q9H2S5 MFAP3L-202ENST00000393702 1505 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
RNF39Q9H2S5 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RNF39Q9H2S5 GPAT2P1-201ENST00000444924 1672 ntBASIC20.58■□□□□ 0.88
RNF39Q9H2S5 TEX21P-204ENST00000641479 1693 ntBASIC20.58■□□□□ 0.88
RNF39Q9H2S5 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RNF39Q9H2S5 MED25-212ENST00000618715 1467 ntTSL 5 BASIC20.57■□□□□ 0.88
RNF39Q9H2S5 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RNF39Q9H2S5 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RNF39Q9H2S5 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RNF39Q9H2S5 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.57■□□□□ 0.88
RNF39Q9H2S5 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RNF39Q9H2S5 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RNF39Q9H2S5 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
RNF39Q9H2S5 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RNF39Q9H2S5 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RNF39Q9H2S5 KRT18P38-201ENST00000449496 1282 ntBASIC20.57■□□□□ 0.88
RNF39Q9H2S5 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
RNF39Q9H2S5 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC20.57■□□□□ 0.88
RNF39Q9H2S5 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC20.57■□□□□ 0.88
RNF39Q9H2S5 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC20.57■□□□□ 0.88
RNF39Q9H2S5 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC20.57■□□□□ 0.88
RNF39Q9H2S5 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC20.57■□□□□ 0.88
RNF39Q9H2S5 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC20.57■□□□□ 0.88
RNF39Q9H2S5 CR769767.2-201ENST00000622735 460 ntBASIC20.57■□□□□ 0.88
RNF39Q9H2S5 AC008993.2-201ENST00000631744 806 ntBASIC20.57■□□□□ 0.88
RNF39Q9H2S5 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
RNF39Q9H2S5 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC20.57■□□□□ 0.88
RNF39Q9H2S5 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RNF39Q9H2S5 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RNF39Q9H2S5 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RNF39Q9H2S5 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF39Q9H2S5 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF39Q9H2S5 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF39Q9H2S5 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF39Q9H2S5 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF39Q9H2S5 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF39Q9H2S5 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC20.56■□□□□ 0.88
RNF39Q9H2S5 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC20.56■□□□□ 0.88
RNF39Q9H2S5 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
RNF39Q9H2S5 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF39Q9H2S5 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms