Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.45■□□□□ 0.54
LRFN3Q9BTN0 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
LRFN3Q9BTN0 AC093520.2-201ENST00000561830 333 ntBASIC18.45■□□□□ 0.54
LRFN3Q9BTN0 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.45■□□□□ 0.54
LRFN3Q9BTN0 AC018845.2-201ENST00000568326 409 ntBASIC18.45■□□□□ 0.54
LRFN3Q9BTN0 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
LRFN3Q9BTN0 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.45■□□□□ 0.54
LRFN3Q9BTN0 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC18.45■□□□□ 0.54
LRFN3Q9BTN0 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC18.45■□□□□ 0.54
LRFN3Q9BTN0 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LRFN3Q9BTN0 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
LRFN3Q9BTN0 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.45■□□□□ 0.54
LRFN3Q9BTN0 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LRFN3Q9BTN0 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC18.45■□□□□ 0.54
LRFN3Q9BTN0 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.45■□□□□ 0.54
LRFN3Q9BTN0 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.45■□□□□ 0.54
LRFN3Q9BTN0 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.45■□□□□ 0.54
LRFN3Q9BTN0 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LRFN3Q9BTN0 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC18.44■□□□□ 0.54
LRFN3Q9BTN0 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.44■□□□□ 0.54
LRFN3Q9BTN0 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LRFN3Q9BTN0 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.44■□□□□ 0.54
LRFN3Q9BTN0 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LRFN3Q9BTN0 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
LRFN3Q9BTN0 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC18.44■□□□□ 0.54
LRFN3Q9BTN0 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LRFN3Q9BTN0 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LRFN3Q9BTN0 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.44■□□□□ 0.54
LRFN3Q9BTN0 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LRFN3Q9BTN0 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LRFN3Q9BTN0 Z98882.1-201ENST00000622160 2253 ntBASIC18.44■□□□□ 0.54
LRFN3Q9BTN0 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LRFN3Q9BTN0 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LRFN3Q9BTN0 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
LRFN3Q9BTN0 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LRFN3Q9BTN0 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
LRFN3Q9BTN0 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LRFN3Q9BTN0 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LRFN3Q9BTN0 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
LRFN3Q9BTN0 CRYGEP-201ENST00000412192 528 ntBASIC18.43■□□□□ 0.54
LRFN3Q9BTN0 FAM86GP-201ENST00000448322 971 ntBASIC18.43■□□□□ 0.54
LRFN3Q9BTN0 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.43■□□□□ 0.54
LRFN3Q9BTN0 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LRFN3Q9BTN0 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.43■□□□□ 0.54
LRFN3Q9BTN0 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LRFN3Q9BTN0 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.43■□□□□ 0.54
LRFN3Q9BTN0 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC18.43■□□□□ 0.54
LRFN3Q9BTN0 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC18.43■□□□□ 0.54
LRFN3Q9BTN0 RN7SL204P-201ENST00000582831 262 ntBASIC18.43■□□□□ 0.54
LRFN3Q9BTN0 CYGB-205ENST00000590175 830 ntTSL 3 BASIC18.43■□□□□ 0.54
LRFN3Q9BTN0 AC004835.2-201ENST00000603762 682 ntBASIC18.43■□□□□ 0.54
LRFN3Q9BTN0 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LRFN3Q9BTN0 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
LRFN3Q9BTN0 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LRFN3Q9BTN0 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LRFN3Q9BTN0 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LRFN3Q9BTN0 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.43■□□□□ 0.54
LRFN3Q9BTN0 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.43■□□□□ 0.54
LRFN3Q9BTN0 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 KRT18P27-201ENST00000427733 1299 ntBASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 YTHDF3-AS1-201ENST00000603538 718 ntBASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 MIR6799-201ENST00000620297 69 ntBASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LRFN3Q9BTN0 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LRFN3Q9BTN0 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
LRFN3Q9BTN0 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LRFN3Q9BTN0 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.41■□□□□ 0.54
LRFN3Q9BTN0 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
LRFN3Q9BTN0 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms