Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VPS35Q96QK1 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS35Q96QK1 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS35Q96QK1 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS35Q96QK1 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS35Q96QK1 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.4■□□□□ 0.54
VPS35Q96QK1 TSPY5P-201ENST00000426936 936 ntBASIC18.4■□□□□ 0.54
VPS35Q96QK1 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.4■□□□□ 0.54
VPS35Q96QK1 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.4■□□□□ 0.54
VPS35Q96QK1 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.4■□□□□ 0.54
VPS35Q96QK1 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS35Q96QK1 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.4■□□□□ 0.54
VPS35Q96QK1 MIR3180-4-201ENST00000582223 153 ntBASIC18.4■□□□□ 0.54
VPS35Q96QK1 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS35Q96QK1 AC024243.1-201ENST00000609234 778 ntBASIC18.4■□□□□ 0.54
VPS35Q96QK1 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VPS35Q96QK1 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
VPS35Q96QK1 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS35Q96QK1 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS35Q96QK1 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS35Q96QK1 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS35Q96QK1 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS35Q96QK1 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.4■□□□□ 0.54
VPS35Q96QK1 KRT8P50-201ENST00000562022 1438 ntBASIC18.4■□□□□ 0.54
VPS35Q96QK1 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
VPS35Q96QK1 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.4■□□□□ 0.54
VPS35Q96QK1 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.4■□□□□ 0.54
VPS35Q96QK1 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
VPS35Q96QK1 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
VPS35Q96QK1 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.54
VPS35Q96QK1 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
VPS35Q96QK1 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
VPS35Q96QK1 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
VPS35Q96QK1 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.39■□□□□ 0.54
VPS35Q96QK1 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.39■□□□□ 0.53
VPS35Q96QK1 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS35Q96QK1 TNXA-203ENST00000507684 2038 ntBASIC18.39■□□□□ 0.53
VPS35Q96QK1 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS35Q96QK1 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
VPS35Q96QK1 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS35Q96QK1 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC18.39■□□□□ 0.53
VPS35Q96QK1 AC063952.2-201ENST00000498792 1227 ntBASIC18.39■□□□□ 0.53
VPS35Q96QK1 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.39■□□□□ 0.53
VPS35Q96QK1 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS35Q96QK1 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.39■□□□□ 0.53
VPS35Q96QK1 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS35Q96QK1 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS35Q96QK1 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS35Q96QK1 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.39■□□□□ 0.53
VPS35Q96QK1 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.39■□□□□ 0.53
VPS35Q96QK1 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.39■□□□□ 0.53
VPS35Q96QK1 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS35Q96QK1 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS35Q96QK1 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
VPS35Q96QK1 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS35Q96QK1 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
VPS35Q96QK1 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS35Q96QK1 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS35Q96QK1 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS35Q96QK1 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
VPS35Q96QK1 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS35Q96QK1 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS35Q96QK1 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS35Q96QK1 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS35Q96QK1 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS35Q96QK1 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS35Q96QK1 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
VPS35Q96QK1 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS35Q96QK1 HOMER2P1-201ENST00000455653 964 ntBASIC18.38■□□□□ 0.53
VPS35Q96QK1 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.38■□□□□ 0.53
VPS35Q96QK1 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS35Q96QK1 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.38■□□□□ 0.53
VPS35Q96QK1 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.38■□□□□ 0.53
VPS35Q96QK1 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.38■□□□□ 0.53
VPS35Q96QK1 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS35Q96QK1 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS35Q96QK1 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS35Q96QK1 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS35Q96QK1 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
VPS35Q96QK1 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS35Q96QK1 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.38■□□□□ 0.53
VPS35Q96QK1 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS35Q96QK1 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS35Q96QK1 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS35Q96QK1 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.37■□□□□ 0.53
VPS35Q96QK1 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS35Q96QK1 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
VPS35Q96QK1 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS35Q96QK1 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS35Q96QK1 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS35Q96QK1 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.37■□□□□ 0.53
VPS35Q96QK1 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS35Q96QK1 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS35Q96QK1 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS35Q96QK1 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
VPS35Q96QK1 FAM8A6P-201ENST00000407496 1135 ntBASIC18.37■□□□□ 0.53
VPS35Q96QK1 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.37■□□□□ 0.53
VPS35Q96QK1 AC034232.1-201ENST00000506026 1064 ntBASIC18.37■□□□□ 0.53
VPS35Q96QK1 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
VPS35Q96QK1 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms