Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.6■□□□□ 0.57
HDDC3Q8N4P3 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 TSPY22P-201ENST00000427496 604 ntBASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 UNC93B7-201ENST00000509439 705 ntBASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 MIR3180-4-201ENST00000582223 153 ntBASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 IFNL4P1-201ENST00000607083 540 ntBASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 AL161938.1-201ENST00000569833 2180 ntBASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HDDC3Q8N4P3 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HDDC3Q8N4P3 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.58■□□□□ 0.57
HDDC3Q8N4P3 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HDDC3Q8N4P3 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.58■□□□□ 0.57
HDDC3Q8N4P3 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HDDC3Q8N4P3 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
HDDC3Q8N4P3 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HDDC3Q8N4P3 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.58■□□□□ 0.57
HDDC3Q8N4P3 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HDDC3Q8N4P3 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HDDC3Q8N4P3 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
HDDC3Q8N4P3 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
HDDC3Q8N4P3 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.58■□□□□ 0.56
HDDC3Q8N4P3 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HDDC3Q8N4P3 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.58■□□□□ 0.56
HDDC3Q8N4P3 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.58■□□□□ 0.56
HDDC3Q8N4P3 RNF126P1-202ENST00000569893 925 ntBASIC18.58■□□□□ 0.56
HDDC3Q8N4P3 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.58■□□□□ 0.56
HDDC3Q8N4P3 MIR3180-1-201ENST00000580374 94 ntBASIC18.58■□□□□ 0.56
HDDC3Q8N4P3 MIR3180-3-201ENST00000584616 94 ntBASIC18.58■□□□□ 0.56
HDDC3Q8N4P3 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.58■□□□□ 0.56
HDDC3Q8N4P3 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
HDDC3Q8N4P3 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HDDC3Q8N4P3 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.58■□□□□ 0.56
HDDC3Q8N4P3 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
HDDC3Q8N4P3 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HDDC3Q8N4P3 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.58■□□□□ 0.56
HDDC3Q8N4P3 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HDDC3Q8N4P3 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HDDC3Q8N4P3 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HDDC3Q8N4P3 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms