Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
USP48Q86UV5 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC22.7■■□□□ 1.22
USP48Q86UV5 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
USP48Q86UV5 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.22
USP48Q86UV5 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC22.7■■□□□ 1.22
USP48Q86UV5 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
USP48Q86UV5 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC22.7■■□□□ 1.22
USP48Q86UV5 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
USP48Q86UV5 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
USP48Q86UV5 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC22.7■■□□□ 1.22
USP48Q86UV5 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC22.7■■□□□ 1.22
USP48Q86UV5 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC22.7■■□□□ 1.22
USP48Q86UV5 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
USP48Q86UV5 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC22.69■■□□□ 1.22
USP48Q86UV5 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
USP48Q86UV5 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC22.69■■□□□ 1.22
USP48Q86UV5 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC22.69■■□□□ 1.22
USP48Q86UV5 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC22.69■■□□□ 1.22
USP48Q86UV5 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
USP48Q86UV5 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC22.69■■□□□ 1.22
USP48Q86UV5 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC22.69■■□□□ 1.22
USP48Q86UV5 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC22.69■■□□□ 1.22
USP48Q86UV5 KRT18P1-202ENST00000452408 1331 ntBASIC22.69■■□□□ 1.22
USP48Q86UV5 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
USP48Q86UV5 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
USP48Q86UV5 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC22.69■■□□□ 1.22
USP48Q86UV5 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
USP48Q86UV5 AC079776.4-201ENST00000511039 504 ntBASIC22.69■■□□□ 1.22
USP48Q86UV5 PNN-202ENST00000553331 656 ntTSL 3 BASIC22.69■■□□□ 1.22
USP48Q86UV5 AC091304.2-201ENST00000564639 760 ntBASIC22.69■■□□□ 1.22
USP48Q86UV5 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC22.69■■□□□ 1.22
USP48Q86UV5 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
USP48Q86UV5 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
USP48Q86UV5 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
USP48Q86UV5 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
USP48Q86UV5 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
USP48Q86UV5 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC22.68■■□□□ 1.22
USP48Q86UV5 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.22
USP48Q86UV5 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
USP48Q86UV5 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
USP48Q86UV5 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
USP48Q86UV5 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
USP48Q86UV5 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC22.68■■□□□ 1.22
USP48Q86UV5 CHCHD2P8-201ENST00000429873 447 ntBASIC22.68■■□□□ 1.22
USP48Q86UV5 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC22.68■■□□□ 1.22
USP48Q86UV5 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
USP48Q86UV5 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC22.68■■□□□ 1.22
USP48Q86UV5 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC22.68■■□□□ 1.22
USP48Q86UV5 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
USP48Q86UV5 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
USP48Q86UV5 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
USP48Q86UV5 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC22.68■■□□□ 1.22
USP48Q86UV5 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC22.68■■□□□ 1.22
USP48Q86UV5 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC22.68■■□□□ 1.22
USP48Q86UV5 AL162741.1-201ENST00000565563 1558 ntBASIC22.67■■□□□ 1.22
USP48Q86UV5 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
USP48Q86UV5 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC22.67■■□□□ 1.22
USP48Q86UV5 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC22.67■■□□□ 1.22
USP48Q86UV5 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
USP48Q86UV5 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC22.67■■□□□ 1.22
USP48Q86UV5 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
USP48Q86UV5 AP000867.3-201ENST00000524675 377 ntBASIC22.67■■□□□ 1.22
USP48Q86UV5 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC22.67■■□□□ 1.22
USP48Q86UV5 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
USP48Q86UV5 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC22.67■■□□□ 1.22
USP48Q86UV5 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
USP48Q86UV5 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
USP48Q86UV5 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
USP48Q86UV5 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
USP48Q86UV5 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC22.66■■□□□ 1.22
USP48Q86UV5 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC22.66■■□□□ 1.22
USP48Q86UV5 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP48Q86UV5 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
USP48Q86UV5 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP48Q86UV5 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC22.66■■□□□ 1.22
USP48Q86UV5 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP48Q86UV5 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP48Q86UV5 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP48Q86UV5 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP48Q86UV5 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC22.66■■□□□ 1.22
USP48Q86UV5 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC22.66■■□□□ 1.22
USP48Q86UV5 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP48Q86UV5 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC22.66■■□□□ 1.22
USP48Q86UV5 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP48Q86UV5 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP48Q86UV5 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP48Q86UV5 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
USP48Q86UV5 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP48Q86UV5 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
USP48Q86UV5 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
USP48Q86UV5 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
USP48Q86UV5 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP48Q86UV5 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP48Q86UV5 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC22.66■■□□□ 1.22
USP48Q86UV5 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC22.66■■□□□ 1.22
USP48Q86UV5 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC22.66■■□□□ 1.22
USP48Q86UV5 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC22.65■■□□□ 1.22
USP48Q86UV5 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
USP48Q86UV5 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC22.65■■□□□ 1.22
USP48Q86UV5 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms