Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
ZNF549Q6P9A3 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.42■□□□□ 0.54
ZNF549Q6P9A3 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ZNF549Q6P9A3 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ZNF549Q6P9A3 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
ZNF549Q6P9A3 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.42■□□□□ 0.54
ZNF549Q6P9A3 MIR1238-201ENST00000408483 83 ntBASIC18.42■□□□□ 0.54
ZNF549Q6P9A3 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.42■□□□□ 0.54
ZNF549Q6P9A3 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.42■□□□□ 0.54
ZNF549Q6P9A3 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.42■□□□□ 0.54
ZNF549Q6P9A3 AP003041.3-201ENST00000527151 707 ntBASIC18.42■□□□□ 0.54
ZNF549Q6P9A3 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
ZNF549Q6P9A3 MIR4497-201ENST00000583208 89 ntBASIC18.42■□□□□ 0.54
ZNF549Q6P9A3 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.42■□□□□ 0.54
ZNF549Q6P9A3 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
ZNF549Q6P9A3 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.42■□□□□ 0.54
ZNF549Q6P9A3 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
ZNF549Q6P9A3 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
ZNF549Q6P9A3 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.42■□□□□ 0.54
ZNF549Q6P9A3 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.42■□□□□ 0.54
ZNF549Q6P9A3 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
ZNF549Q6P9A3 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ZNF549Q6P9A3 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ZNF549Q6P9A3 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 SLC25A1P2-201ENST00000430693 912 ntBASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 AL353719.1-201ENST00000566847 864 ntBASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 KRT17P2-201ENST00000300992 1314 ntBASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
ZNF549Q6P9A3 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 KRT8P9-201ENST00000558927 1449 ntBASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 AC092338.2-201ENST00000568827 1415 ntBASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 MIR3180-5-201ENST00000583743 153 ntBASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF549Q6P9A3 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
ZNF549Q6P9A3 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.39■□□□□ 0.54
ZNF549Q6P9A3 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
ZNF549Q6P9A3 AC036111.1-201ENST00000533973 1582 ntBASIC18.39■□□□□ 0.53
ZNF549Q6P9A3 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
ZNF549Q6P9A3 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.39■□□□□ 0.53
ZNF549Q6P9A3 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ZNF549Q6P9A3 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ZNF549Q6P9A3 INGX-201ENST00000359239 846 ntBASIC18.39■□□□□ 0.53
ZNF549Q6P9A3 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.39■□□□□ 0.53
ZNF549Q6P9A3 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.39■□□□□ 0.53
ZNF549Q6P9A3 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.39■□□□□ 0.53
ZNF549Q6P9A3 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.39■□□□□ 0.53
ZNF549Q6P9A3 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.39■□□□□ 0.53
ZNF549Q6P9A3 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ZNF549Q6P9A3 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
ZNF549Q6P9A3 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
ZNF549Q6P9A3 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
ZNF549Q6P9A3 KRT8P50-201ENST00000562022 1438 ntBASIC18.39■□□□□ 0.53
ZNF549Q6P9A3 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
ZNF549Q6P9A3 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
ZNF549Q6P9A3 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
ZNF549Q6P9A3 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ZNF549Q6P9A3 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ZNF549Q6P9A3 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
ZNF549Q6P9A3 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
ZNF549Q6P9A3 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms