Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 RN7SL471P-201ENST00000580476 299 ntBASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 AC104417.2-201ENST00000562989 1793 ntBASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 AC116351.2-201ENST00000606540 1585 ntBASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 GCSHP5-201ENST00000443090 522 ntBASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 DET1-205ENST00000558413 583 ntTSL 4 BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 AL359736.2-201ENST00000621992 437 ntBASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 AC012313.1-201ENST00000593393 3059 ntBASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 AC126763.1-201ENST00000552015 2118 ntBASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.78■□□□□ 0.44
PPP4R4Q6NUP7 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 MTDHP1-201ENST00000605323 784 ntBASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
PPP4R4Q6NUP7 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
PPP4R4Q6NUP7 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.77■□□□□ 0.43
PPP4R4Q6NUP7 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.43
PPP4R4Q6NUP7 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 SIRPAP1-201ENST00000448467 1770 ntBASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms