Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC005521.1-201ENST00000393351 872 ntBASIC17.6■□□□□ 0.41
LIM2P55344 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIM2P55344 AL137013.1-201ENST00000432946 1228 ntBASIC17.6■□□□□ 0.41
LIM2P55344 AC009947.2-201ENST00000444014 672 ntBASIC17.6■□□□□ 0.41
LIM2P55344 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIM2P55344 ATP5G1P1-201ENST00000448724 379 ntBASIC17.6■□□□□ 0.41
LIM2P55344 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.6■□□□□ 0.41
LIM2P55344 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.6■□□□□ 0.41
LIM2P55344 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIM2P55344 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIM2P55344 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
LIM2P55344 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
LIM2P55344 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIM2P55344 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIM2P55344 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.6■□□□□ 0.41
LIM2P55344 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIM2P55344 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIM2P55344 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.6■□□□□ 0.41
LIM2P55344 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
LIM2P55344 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.6■□□□□ 0.41
LIM2P55344 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIM2P55344 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIM2P55344 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIM2P55344 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.6■□□□□ 0.41
LIM2P55344 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIM2P55344 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.6■□□□□ 0.41
LIM2P55344 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.6■□□□□ 0.41
LIM2P55344 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIM2P55344 AL390961.4-201ENST00000623958 2535 ntBASIC17.6■□□□□ 0.41
LIM2P55344 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIM2P55344 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.6■□□□□ 0.41
LIM2P55344 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.6■□□□□ 0.41
LIM2P55344 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIM2P55344 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIM2P55344 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
LIM2P55344 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIM2P55344 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.59■□□□□ 0.41
LIM2P55344 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.59■□□□□ 0.41
LIM2P55344 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIM2P55344 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIM2P55344 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIM2P55344 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIM2P55344 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIM2P55344 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
LIM2P55344 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIM2P55344 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIM2P55344 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIM2P55344 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIM2P55344 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIM2P55344 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIM2P55344 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIM2P55344 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.59■□□□□ 0.41
LIM2P55344 KRT18P41-201ENST00000518924 1277 ntBASIC17.59■□□□□ 0.41
LIM2P55344 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIM2P55344 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.59■□□□□ 0.41
LIM2P55344 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.59■□□□□ 0.41
LIM2P55344 AC141257.4-201ENST00000634557 245 ntBASIC17.59■□□□□ 0.41
LIM2P55344 AC136944.6-201ENST00000634818 245 ntBASIC17.59■□□□□ 0.41
LIM2P55344 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIM2P55344 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
LIM2P55344 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.59■□□□□ 0.41
LIM2P55344 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
LIM2P55344 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIM2P55344 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIM2P55344 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIM2P55344 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIM2P55344 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LIM2P55344 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
LIM2P55344 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
LIM2P55344 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
LIM2P55344 AC073508.3-201ENST00000619697 1419 ntBASIC17.58■□□□□ 0.41
LIM2P55344 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIM2P55344 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
LIM2P55344 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIM2P55344 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIM2P55344 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LIM2P55344 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
LIM2P55344 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.58■□□□□ 0.4
LIM2P55344 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIM2P55344 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.58■□□□□ 0.4
LIM2P55344 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.58■□□□□ 0.4
LIM2P55344 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.58■□□□□ 0.4
LIM2P55344 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.58■□□□□ 0.4
LIM2P55344 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIM2P55344 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.58■□□□□ 0.4
LIM2P55344 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.58■□□□□ 0.4
LIM2P55344 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.58■□□□□ 0.4
LIM2P55344 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.58■□□□□ 0.4
LIM2P55344 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
LIM2P55344 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
LIM2P55344 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.58■□□□□ 0.4
LIM2P55344 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIM2P55344 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIM2P55344 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIM2P55344 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LIM2P55344 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LIM2P55344 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LIM2P55344 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.57■□□□□ 0.4
LIM2P55344 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIM2P55344 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms