Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
LHX1P48742 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LHX1P48742 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LHX1P48742 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.62■□□□□ 0.73
LHX1P48742 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
LHX1P48742 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC19.62■□□□□ 0.73
LHX1P48742 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.62■□□□□ 0.73
LHX1P48742 UPK3BP1-201ENST00000428678 509 ntBASIC19.62■□□□□ 0.73
LHX1P48742 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
LHX1P48742 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LHX1P48742 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
LHX1P48742 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LHX1P48742 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LHX1P48742 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.62■□□□□ 0.73
LHX1P48742 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
LHX1P48742 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.62■□□□□ 0.73
LHX1P48742 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LHX1P48742 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LHX1P48742 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LHX1P48742 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LHX1P48742 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LHX1P48742 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.62■□□□□ 0.73
LHX1P48742 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.62■□□□□ 0.73
LHX1P48742 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LHX1P48742 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LHX1P48742 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LHX1P48742 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LHX1P48742 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LHX1P48742 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.61■□□□□ 0.73
LHX1P48742 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LHX1P48742 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.61■□□□□ 0.73
LHX1P48742 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.61■□□□□ 0.73
LHX1P48742 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LHX1P48742 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
LHX1P48742 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC19.61■□□□□ 0.73
LHX1P48742 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.61■□□□□ 0.73
LHX1P48742 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.61■□□□□ 0.73
LHX1P48742 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LHX1P48742 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LHX1P48742 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LHX1P48742 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LHX1P48742 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.61■□□□□ 0.73
LHX1P48742 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.61■□□□□ 0.73
LHX1P48742 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC19.61■□□□□ 0.73
LHX1P48742 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19.61■□□□□ 0.73
LHX1P48742 NDUFV2-AS1-203ENST00000608008 779 ntBASIC19.61■□□□□ 0.73
LHX1P48742 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
LHX1P48742 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LHX1P48742 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.61■□□□□ 0.73
LHX1P48742 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LHX1P48742 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
LHX1P48742 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.61■□□□□ 0.73
LHX1P48742 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.61■□□□□ 0.73
LHX1P48742 AL162741.1-201ENST00000565563 1558 ntBASIC19.61■□□□□ 0.73
LHX1P48742 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LHX1P48742 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
LHX1P48742 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LHX1P48742 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LHX1P48742 AC009102.3-201ENST00000623118 1491 ntBASIC19.6■□□□□ 0.73
LHX1P48742 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LHX1P48742 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.6■□□□□ 0.73
LHX1P48742 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.6■□□□□ 0.73
LHX1P48742 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LHX1P48742 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LHX1P48742 AL031598.1-201ENST00000561511 1773 ntBASIC19.6■□□□□ 0.73
LHX1P48742 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LHX1P48742 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.6■□□□□ 0.73
LHX1P48742 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LHX1P48742 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LHX1P48742 CNP-204ENST00000472031 1019 ntTSL 2 BASIC19.6■□□□□ 0.73
LHX1P48742 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.6■□□□□ 0.73
LHX1P48742 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC19.6■□□□□ 0.73
LHX1P48742 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
LHX1P48742 LITAF-220ENST00000620789 692 ntTSL 5 BASIC19.6■□□□□ 0.73
LHX1P48742 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.6■□□□□ 0.73
LHX1P48742 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LHX1P48742 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LHX1P48742 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
LHX1P48742 AL499627.1-201ENST00000569373 2188 ntBASIC19.6■□□□□ 0.73
LHX1P48742 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LHX1P48742 BX323043.1-201ENST00000641006 1765 ntBASIC19.6■□□□□ 0.73
LHX1P48742 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.59■□□□□ 0.73
LHX1P48742 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LHX1P48742 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.59■□□□□ 0.73
LHX1P48742 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC19.59■□□□□ 0.73
LHX1P48742 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
LHX1P48742 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
LHX1P48742 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.59■□□□□ 0.73
LHX1P48742 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC19.59■□□□□ 0.73
LHX1P48742 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.59■□□□□ 0.73
LHX1P48742 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LHX1P48742 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC19.59■□□□□ 0.73
LHX1P48742 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.59■□□□□ 0.73
LHX1P48742 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.59■□□□□ 0.73
LHX1P48742 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LHX1P48742 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LHX1P48742 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LHX1P48742 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
LHX1P48742 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LHX1P48742 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms