Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CHRNA4P43681 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
CHRNA4P43681 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA4P43681 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.7■□□□□ 0.58
CHRNA4P43681 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA4P43681 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.7■□□□□ 0.58
CHRNA4P43681 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA4P43681 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.7■□□□□ 0.58
CHRNA4P43681 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA4P43681 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA4P43681 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA4P43681 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
CHRNA4P43681 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CHRNA4P43681 HMGA1P5-201ENST00000412453 271 ntBASIC18.7■□□□□ 0.58
CHRNA4P43681 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.7■□□□□ 0.58
CHRNA4P43681 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.7■□□□□ 0.58
CHRNA4P43681 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.7■□□□□ 0.58
CHRNA4P43681 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC18.7■□□□□ 0.58
CHRNA4P43681 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA4P43681 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.7■□□□□ 0.58
CHRNA4P43681 MYC-208ENST00000641036 567 ntBASIC18.7■□□□□ 0.58
CHRNA4P43681 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA4P43681 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.7■□□□□ 0.58
CHRNA4P43681 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA4P43681 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA4P43681 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
CHRNA4P43681 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CHRNA4P43681 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHRNA4P43681 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA4P43681 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.69■□□□□ 0.58
CHRNA4P43681 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA4P43681 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA4P43681 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CHRNA4P43681 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.69■□□□□ 0.58
CHRNA4P43681 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA4P43681 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA4P43681 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA4P43681 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA4P43681 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.69■□□□□ 0.58
CHRNA4P43681 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA4P43681 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA4P43681 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.69■□□□□ 0.58
CHRNA4P43681 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.69■□□□□ 0.58
CHRNA4P43681 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA4P43681 KRT18P23-201ENST00000435622 1283 ntBASIC18.69■□□□□ 0.58
CHRNA4P43681 AC009947.2-201ENST00000444014 672 ntBASIC18.69■□□□□ 0.58
CHRNA4P43681 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.69■□□□□ 0.58
CHRNA4P43681 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA4P43681 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.69■□□□□ 0.58
CHRNA4P43681 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA4P43681 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA4P43681 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CHRNA4P43681 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.69■□□□□ 0.58
CHRNA4P43681 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA4P43681 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.69■□□□□ 0.58
CHRNA4P43681 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA4P43681 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA4P43681 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CHRNA4P43681 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA4P43681 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA4P43681 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA4P43681 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA4P43681 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.68■□□□□ 0.58
CHRNA4P43681 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CHRNA4P43681 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.68■□□□□ 0.58
CHRNA4P43681 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.68■□□□□ 0.58
CHRNA4P43681 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA4P43681 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CHRNA4P43681 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.68■□□□□ 0.58
CHRNA4P43681 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA4P43681 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA4P43681 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.68■□□□□ 0.58
CHRNA4P43681 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA4P43681 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA4P43681 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA4P43681 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA4P43681 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA4P43681 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA4P43681 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA4P43681 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.68■□□□□ 0.58
CHRNA4P43681 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA4P43681 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA4P43681 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA4P43681 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.68■□□□□ 0.58
CHRNA4P43681 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA4P43681 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CHRNA4P43681 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA4P43681 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CHRNA4P43681 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA4P43681 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CHRNA4P43681 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.68■□□□□ 0.58
CHRNA4P43681 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA4P43681 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA4P43681 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.68■□□□□ 0.58
CHRNA4P43681 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA4P43681 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CHRNA4P43681 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.67■□□□□ 0.58
CHRNA4P43681 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHRNA4P43681 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.67■□□□□ 0.58
CHRNA4P43681 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms