Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
BRCA1P38398 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC22.53■■□□□ 1.2
BRCA1P38398 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
BRCA1P38398 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC22.53■■□□□ 1.2
BRCA1P38398 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
BRCA1P38398 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
BRCA1P38398 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
BRCA1P38398 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
BRCA1P38398 MCCD1P2-201ENST00000423228 335 ntBASIC22.53■■□□□ 1.2
BRCA1P38398 KRT18P27-201ENST00000427733 1299 ntBASIC22.53■■□□□ 1.2
BRCA1P38398 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
BRCA1P38398 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC22.53■■□□□ 1.2
BRCA1P38398 AC083906.6-201ENST00000641366 219 ntBASIC22.53■■□□□ 1.2
BRCA1P38398 AC079781.4-201ENST00000641908 219 ntBASIC22.53■■□□□ 1.2
BRCA1P38398 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
BRCA1P38398 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC22.53■■□□□ 1.2
BRCA1P38398 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
BRCA1P38398 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
BRCA1P38398 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
BRCA1P38398 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
BRCA1P38398 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
BRCA1P38398 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
BRCA1P38398 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC22.52■■□□□ 1.2
BRCA1P38398 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC22.52■■□□□ 1.2
BRCA1P38398 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
BRCA1P38398 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC22.52■■□□□ 1.2
BRCA1P38398 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
BRCA1P38398 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC22.52■■□□□ 1.2
BRCA1P38398 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
BRCA1P38398 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC22.52■■□□□ 1.2
BRCA1P38398 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC22.52■■□□□ 1.2
BRCA1P38398 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC22.51■■□□□ 1.19
BRCA1P38398 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
BRCA1P38398 HTR5BP-201ENST00000430851 1154 ntBASIC22.51■■□□□ 1.19
BRCA1P38398 ETFA-208ENST00000559602 792 ntTSL 3 BASIC22.51■■□□□ 1.19
BRCA1P38398 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC22.51■■□□□ 1.19
BRCA1P38398 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC22.51■■□□□ 1.19
BRCA1P38398 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC22.51■■□□□ 1.19
BRCA1P38398 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
BRCA1P38398 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
BRCA1P38398 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC22.51■■□□□ 1.19
BRCA1P38398 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
BRCA1P38398 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
BRCA1P38398 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC22.51■■□□□ 1.19
BRCA1P38398 PON3-203ENST00000427422 894 ntTSL 3 BASIC22.51■■□□□ 1.19
BRCA1P38398 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
BRCA1P38398 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC22.51■■□□□ 1.19
BRCA1P38398 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC22.51■■□□□ 1.19
BRCA1P38398 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC22.51■■□□□ 1.19
BRCA1P38398 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC22.51■■□□□ 1.19
BRCA1P38398 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC22.51■■□□□ 1.19
BRCA1P38398 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
BRCA1P38398 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
BRCA1P38398 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC22.51■■□□□ 1.19
BRCA1P38398 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
BRCA1P38398 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
BRCA1P38398 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
BRCA1P38398 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
BRCA1P38398 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
BRCA1P38398 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC22.5■■□□□ 1.19
BRCA1P38398 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC22.5■■□□□ 1.19
BRCA1P38398 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC22.5■■□□□ 1.19
BRCA1P38398 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC22.5■■□□□ 1.19
BRCA1P38398 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
BRCA1P38398 AC105339.3-201ENST00000560043 636 ntBASIC22.5■■□□□ 1.19
BRCA1P38398 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC22.5■■□□□ 1.19
BRCA1P38398 LBX2-AS1-202ENST00000603175 2083 ntBASIC22.5■■□□□ 1.19
BRCA1P38398 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC22.5■■□□□ 1.19
BRCA1P38398 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
BRCA1P38398 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
BRCA1P38398 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
BRCA1P38398 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
BRCA1P38398 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
BRCA1P38398 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
BRCA1P38398 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
BRCA1P38398 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
BRCA1P38398 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC22.49■■□□□ 1.19
BRCA1P38398 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
BRCA1P38398 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC22.49■■□□□ 1.19
BRCA1P38398 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC22.49■■□□□ 1.19
BRCA1P38398 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC22.49■■□□□ 1.19
BRCA1P38398 AL596442.2-201ENST00000610240 980 ntBASIC22.49■■□□□ 1.19
BRCA1P38398 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC22.49■■□□□ 1.19
BRCA1P38398 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
BRCA1P38398 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC22.49■■□□□ 1.19
BRCA1P38398 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
BRCA1P38398 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
BRCA1P38398 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC22.49■■□□□ 1.19
BRCA1P38398 HEIH-201ENST00000623091 1652 ntBASIC22.49■■□□□ 1.19
BRCA1P38398 UBQLN4P1-201ENST00000461599 1801 ntBASIC22.49■■□□□ 1.19
BRCA1P38398 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
BRCA1P38398 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC22.49■■□□□ 1.19
BRCA1P38398 LAGE3P1-201ENST00000425356 484 ntBASIC22.49■■□□□ 1.19
BRCA1P38398 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC22.49■■□□□ 1.19
BRCA1P38398 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC22.49■■□□□ 1.19
BRCA1P38398 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
BRCA1P38398 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
BRCA1P38398 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC22.49■■□□□ 1.19
BRCA1P38398 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
BRCA1P38398 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms