Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC19.29■□□□□ 0.68
COL6A3P12111 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A3P12111 NME2P1-201ENST00000426182 414 ntBASIC19.28■□□□□ 0.68
COL6A3P12111 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC19.28■□□□□ 0.68
COL6A3P12111 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A3P12111 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.28■□□□□ 0.68
COL6A3P12111 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
COL6A3P12111 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
COL6A3P12111 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
COL6A3P12111 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.28■□□□□ 0.68
COL6A3P12111 PMS2P4-201ENST00000412466 1052 ntBASIC19.28■□□□□ 0.68
COL6A3P12111 INGX-202ENST00000489074 768 ntBASIC19.28■□□□□ 0.68
COL6A3P12111 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC19.28■□□□□ 0.68
COL6A3P12111 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC19.28■□□□□ 0.68
COL6A3P12111 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A3P12111 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A3P12111 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A3P12111 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC19.28■□□□□ 0.68
COL6A3P12111 ETFA-208ENST00000559602 792 ntTSL 3 BASIC19.28■□□□□ 0.68
COL6A3P12111 AL138831.2-201ENST00000606564 490 ntBASIC19.28■□□□□ 0.68
COL6A3P12111 AC025048.6-201ENST00000634326 1161 ntBASIC19.28■□□□□ 0.68
COL6A3P12111 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL6A3P12111 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC19.27■□□□□ 0.68
COL6A3P12111 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL6A3P12111 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC19.27■□□□□ 0.68
COL6A3P12111 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL6A3P12111 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL6A3P12111 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL6A3P12111 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC19.27■□□□□ 0.67
COL6A3P12111 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC19.27■□□□□ 0.67
COL6A3P12111 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL6A3P12111 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.27■□□□□ 0.67
COL6A3P12111 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL6A3P12111 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
COL6A3P12111 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL6A3P12111 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL6A3P12111 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
COL6A3P12111 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.26■□□□□ 0.67
COL6A3P12111 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
COL6A3P12111 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
COL6A3P12111 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
COL6A3P12111 GALT-202ENST00000450095 1280 ntTSL 2 BASIC19.26■□□□□ 0.67
COL6A3P12111 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC19.26■□□□□ 0.67
COL6A3P12111 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC19.26■□□□□ 0.67
COL6A3P12111 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A3P12111 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A3P12111 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A3P12111 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A3P12111 FUOM-202ENST00000368551 628 ntTSL 3 BASIC19.26■□□□□ 0.67
COL6A3P12111 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC19.26■□□□□ 0.67
COL6A3P12111 LAGE3P1-201ENST00000425356 484 ntBASIC19.26■□□□□ 0.67
COL6A3P12111 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A3P12111 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
COL6A3P12111 KRT8P7-201ENST00000533003 1432 ntBASIC19.26■□□□□ 0.67
COL6A3P12111 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.26■□□□□ 0.67
COL6A3P12111 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.26■□□□□ 0.67
COL6A3P12111 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
COL6A3P12111 AP005212.1-201ENST00000581547 1997 ntBASIC19.26■□□□□ 0.67
COL6A3P12111 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A3P12111 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC19.26■□□□□ 0.67
COL6A3P12111 CBR1-202ENST00000399191 838 ntTSL 3 BASIC19.26■□□□□ 0.67
COL6A3P12111 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC19.26■□□□□ 0.67
COL6A3P12111 ABCD1P5-201ENST00000445663 754 ntBASIC19.26■□□□□ 0.67
COL6A3P12111 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC19.26■□□□□ 0.67
COL6A3P12111 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A3P12111 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
COL6A3P12111 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A3P12111 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A3P12111 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A3P12111 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A3P12111 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC19.25■□□□□ 0.67
COL6A3P12111 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A3P12111 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A3P12111 AC073621.1-201ENST00000392730 636 ntBASIC19.25■□□□□ 0.67
COL6A3P12111 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A3P12111 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC19.25■□□□□ 0.67
COL6A3P12111 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.25■□□□□ 0.67
COL6A3P12111 HFE2-206ENST00000634927 506 ntTSL 4 BASIC19.25■□□□□ 0.67
COL6A3P12111 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
COL6A3P12111 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.25■□□□□ 0.67
COL6A3P12111 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC19.25■□□□□ 0.67
COL6A3P12111 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A3P12111 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A3P12111 AC023141.5-201ENST00000458585 616 ntBASIC19.25■□□□□ 0.67
COL6A3P12111 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A3P12111 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A3P12111 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A3P12111 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A3P12111 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
COL6A3P12111 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
COL6A3P12111 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A3P12111 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A3P12111 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC19.24■□□□□ 0.67
COL6A3P12111 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC19.24■□□□□ 0.67
COL6A3P12111 AC116407.2-201ENST00000613639 860 ntBASIC19.24■□□□□ 0.67
COL6A3P12111 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A3P12111 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A3P12111 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.24■□□□□ 0.67
COL6A3P12111 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.24■□□□□ 0.67
COL6A3P12111 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms