Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
APOEP02649 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.43■□□□□ 0.7
APOEP02649 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
APOEP02649 HEIH-201ENST00000623091 1652 ntBASIC19.43■□□□□ 0.7
APOEP02649 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.43■□□□□ 0.7
APOEP02649 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.43■□□□□ 0.7
APOEP02649 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
APOEP02649 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
APOEP02649 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
APOEP02649 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.42■□□□□ 0.7
APOEP02649 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
APOEP02649 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
APOEP02649 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
APOEP02649 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
APOEP02649 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
APOEP02649 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.42■□□□□ 0.7
APOEP02649 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.42■□□□□ 0.7
APOEP02649 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
APOEP02649 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.42■□□□□ 0.7
APOEP02649 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.42■□□□□ 0.7
APOEP02649 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.42■□□□□ 0.7
APOEP02649 NEK4P2-201ENST00000580004 1012 ntBASIC19.42■□□□□ 0.7
APOEP02649 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.42■□□□□ 0.7
APOEP02649 AL031432.5-201ENST00000641059 760 ntBASIC19.42■□□□□ 0.7
APOEP02649 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
APOEP02649 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
APOEP02649 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
APOEP02649 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
APOEP02649 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.42■□□□□ 0.7
APOEP02649 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
APOEP02649 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
APOEP02649 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.42■□□□□ 0.7
APOEP02649 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.42■□□□□ 0.7
APOEP02649 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
APOEP02649 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
APOEP02649 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.42■□□□□ 0.7
APOEP02649 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
APOEP02649 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
APOEP02649 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
APOEP02649 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
APOEP02649 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
APOEP02649 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
APOEP02649 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.41■□□□□ 0.7
APOEP02649 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
APOEP02649 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
APOEP02649 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
APOEP02649 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
APOEP02649 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
APOEP02649 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.41■□□□□ 0.7
APOEP02649 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
APOEP02649 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.41■□□□□ 0.7
APOEP02649 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
APOEP02649 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
APOEP02649 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.41■□□□□ 0.7
APOEP02649 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.41■□□□□ 0.7
APOEP02649 AC140113.3-201ENST00000605663 199 ntBASIC19.41■□□□□ 0.7
APOEP02649 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.41■□□□□ 0.7
APOEP02649 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
APOEP02649 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
APOEP02649 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC19.41■□□□□ 0.7
APOEP02649 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
APOEP02649 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
APOEP02649 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
APOEP02649 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
APOEP02649 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
APOEP02649 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
APOEP02649 AL031598.1-201ENST00000561511 1773 ntBASIC19.4■□□□□ 0.7
APOEP02649 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.4■□□□□ 0.7
APOEP02649 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
APOEP02649 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.4■□□□□ 0.7
APOEP02649 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
APOEP02649 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.4■□□□□ 0.7
APOEP02649 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
APOEP02649 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
APOEP02649 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
APOEP02649 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
APOEP02649 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.4■□□□□ 0.7
APOEP02649 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.4■□□□□ 0.7
APOEP02649 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
APOEP02649 AC139887.4-201ENST00000607877 719 ntBASIC19.4■□□□□ 0.7
APOEP02649 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
APOEP02649 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
APOEP02649 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
APOEP02649 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
APOEP02649 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
APOEP02649 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
APOEP02649 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
APOEP02649 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
APOEP02649 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.39■□□□□ 0.7
APOEP02649 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.39■□□□□ 0.7
APOEP02649 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
APOEP02649 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
APOEP02649 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
APOEP02649 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
APOEP02649 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.69
APOEP02649 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
APOEP02649 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
APOEP02649 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
APOEP02649 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.39■□□□□ 0.69
APOEP02649 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms