Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC22.3■■□□□ 1.16
COL1A1P02452 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL1A1P02452 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL1A1P02452 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC22.3■■□□□ 1.16
COL1A1P02452 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL1A1P02452 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL1A1P02452 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC22.29■■□□□ 1.16
COL1A1P02452 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL1A1P02452 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
COL1A1P02452 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL1A1P02452 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC22.29■■□□□ 1.16
COL1A1P02452 KRT18P31-201ENST00000506277 1292 ntBASIC22.29■■□□□ 1.16
COL1A1P02452 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
COL1A1P02452 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC22.29■■□□□ 1.16
COL1A1P02452 SLC25A6P4-201ENST00000586535 553 ntBASIC22.29■■□□□ 1.16
COL1A1P02452 AC004263.2-201ENST00000617183 678 ntBASIC22.29■■□□□ 1.16
COL1A1P02452 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL1A1P02452 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
COL1A1P02452 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
COL1A1P02452 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL1A1P02452 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL1A1P02452 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC22.29■■□□□ 1.16
COL1A1P02452 KRT89P-201ENST00000620027 1478 ntBASIC22.29■■□□□ 1.16
COL1A1P02452 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL1A1P02452 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
COL1A1P02452 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL1A1P02452 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL1A1P02452 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC22.29■■□□□ 1.16
COL1A1P02452 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC22.29■■□□□ 1.16
COL1A1P02452 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL1A1P02452 MIR149-201ENST00000384879 89 ntBASIC22.28■■□□□ 1.16
COL1A1P02452 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC22.28■■□□□ 1.16
COL1A1P02452 AC091304.2-201ENST00000564639 760 ntBASIC22.28■■□□□ 1.16
COL1A1P02452 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC22.28■■□□□ 1.16
COL1A1P02452 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC22.28■■□□□ 1.16
COL1A1P02452 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL1A1P02452 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL1A1P02452 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC22.28■■□□□ 1.16
COL1A1P02452 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL1A1P02452 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL1A1P02452 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL1A1P02452 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC22.28■■□□□ 1.16
COL1A1P02452 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC22.28■■□□□ 1.16
COL1A1P02452 AL024508.2-201ENST00000607749 1894 ntBASIC22.28■■□□□ 1.16
COL1A1P02452 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL1A1P02452 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL1A1P02452 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC22.28■■□□□ 1.16
COL1A1P02452 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL1A1P02452 HES2-202ENST00000377836 507 ntTSL 2 BASIC22.28■■□□□ 1.16
COL1A1P02452 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
COL1A1P02452 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC22.28■■□□□ 1.16
COL1A1P02452 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL1A1P02452 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
COL1A1P02452 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL1A1P02452 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL1A1P02452 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC22.28■■□□□ 1.16
COL1A1P02452 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
COL1A1P02452 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
COL1A1P02452 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC22.27■■□□□ 1.16
COL1A1P02452 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL1A1P02452 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC22.27■■□□□ 1.16
COL1A1P02452 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
COL1A1P02452 NARF-204ENST00000390006 1766 ntTSL 2 BASIC22.27■■□□□ 1.16
COL1A1P02452 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL1A1P02452 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL1A1P02452 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL1A1P02452 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
COL1A1P02452 AC104819.1-201ENST00000504587 486 ntBASIC22.27■■□□□ 1.16
COL1A1P02452 AP002469.2-201ENST00000531724 424 ntBASIC22.27■■□□□ 1.16
COL1A1P02452 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
COL1A1P02452 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.15
COL1A1P02452 SDHAP2-201ENST00000455183 2001 ntBASIC22.27■■□□□ 1.15
COL1A1P02452 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
COL1A1P02452 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC22.27■■□□□ 1.15
COL1A1P02452 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC22.27■■□□□ 1.15
COL1A1P02452 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL1A1P02452 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
COL1A1P02452 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL1A1P02452 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL1A1P02452 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
COL1A1P02452 COBL-210ENST00000632460 1941 ntTSL 5 BASIC22.26■■□□□ 1.15
COL1A1P02452 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC22.26■■□□□ 1.15
COL1A1P02452 LINC00167-201ENST00000530583 1419 ntBASIC22.26■■□□□ 1.15
COL1A1P02452 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL1A1P02452 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
COL1A1P02452 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
COL1A1P02452 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL1A1P02452 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC22.26■■□□□ 1.15
COL1A1P02452 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC22.26■■□□□ 1.15
COL1A1P02452 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC22.26■■□□□ 1.15
COL1A1P02452 PPOX-214ENST00000535223 664 ntTSL 3 BASIC22.26■■□□□ 1.15
COL1A1P02452 AL662844.1-201ENST00000546340 181 ntBASIC22.26■■□□□ 1.15
COL1A1P02452 CALM1-205ENST00000553542 877 ntTSL 5 BASIC22.26■■□□□ 1.15
COL1A1P02452 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC22.26■■□□□ 1.15
COL1A1P02452 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC22.26■■□□□ 1.15
COL1A1P02452 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
COL1A1P02452 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL1A1P02452 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL1A1P02452 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
COL1A1P02452 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms