Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AC067852.2-201ENST00000590513 2313 ntBASIC18.15■□□□□ 0.5
SIX3O95343 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX3O95343 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX3O95343 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.15■□□□□ 0.5
SIX3O95343 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.15■□□□□ 0.5
SIX3O95343 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX3O95343 PCDHB18P-201ENST00000524813 2368 ntBASIC18.15■□□□□ 0.5
SIX3O95343 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.15■□□□□ 0.5
SIX3O95343 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.15■□□□□ 0.5
SIX3O95343 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX3O95343 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.15■□□□□ 0.5
SIX3O95343 RPS2P55-201ENST00000397318 883 ntBASIC18.15■□□□□ 0.5
SIX3O95343 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.15■□□□□ 0.5
SIX3O95343 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SIX3O95343 AC107956.1-201ENST00000494359 873 ntBASIC18.15■□□□□ 0.5
SIX3O95343 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18.15■□□□□ 0.5
SIX3O95343 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.15■□□□□ 0.5
SIX3O95343 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.15■□□□□ 0.5
SIX3O95343 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.15■□□□□ 0.5
SIX3O95343 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.15■□□□□ 0.5
SIX3O95343 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SIX3O95343 AC113410.3-201ENST00000623366 203 ntBASIC18.15■□□□□ 0.5
SIX3O95343 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.15■□□□□ 0.5
SIX3O95343 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX3O95343 MYLKP1-201ENST00000509077 1580 ntBASIC18.15■□□□□ 0.5
SIX3O95343 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX3O95343 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX3O95343 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SIX3O95343 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX3O95343 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SIX3O95343 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX3O95343 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
SIX3O95343 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.14■□□□□ 0.5
SIX3O95343 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.14■□□□□ 0.5
SIX3O95343 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.14■□□□□ 0.49
SIX3O95343 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
SIX3O95343 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.14■□□□□ 0.49
SIX3O95343 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SIX3O95343 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.14■□□□□ 0.49
SIX3O95343 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SIX3O95343 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SIX3O95343 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SIX3O95343 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
SIX3O95343 AL023284.2-201ENST00000405850 579 ntBASIC18.14■□□□□ 0.49
SIX3O95343 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.14■□□□□ 0.49
SIX3O95343 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SIX3O95343 ESPNP-201ENST00000270691 2015 ntBASIC18.14■□□□□ 0.49
SIX3O95343 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
SIX3O95343 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SIX3O95343 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SIX3O95343 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
SIX3O95343 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SIX3O95343 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SIX3O95343 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SIX3O95343 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SIX3O95343 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
SIX3O95343 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SIX3O95343 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
SIX3O95343 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.14■□□□□ 0.49
SIX3O95343 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX3O95343 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SIX3O95343 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SIX3O95343 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
SIX3O95343 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX3O95343 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX3O95343 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX3O95343 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
SIX3O95343 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX3O95343 ABHD17AP1-201ENST00000358206 933 ntBASIC18.13■□□□□ 0.49
SIX3O95343 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX3O95343 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
SIX3O95343 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.13■□□□□ 0.49
SIX3O95343 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.13■□□□□ 0.49
SIX3O95343 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX3O95343 UBE2SP1-201ENST00000450587 669 ntBASIC18.13■□□□□ 0.49
SIX3O95343 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX3O95343 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.13■□□□□ 0.49
SIX3O95343 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.13■□□□□ 0.49
SIX3O95343 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
SIX3O95343 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX3O95343 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX3O95343 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX3O95343 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
SIX3O95343 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
SIX3O95343 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
SIX3O95343 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
SIX3O95343 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SIX3O95343 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.13■□□□□ 0.49
SIX3O95343 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX3O95343 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX3O95343 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX3O95343 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.12■□□□□ 0.49
SIX3O95343 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX3O95343 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SIX3O95343 AC093677.2-201ENST00000600169 1863 ntBASIC18.12■□□□□ 0.49
SIX3O95343 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.12■□□□□ 0.49
SIX3O95343 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX3O95343 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SIX3O95343 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SIX3O95343 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms