Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC15.15■□□□□ 0.02
SSSCA1O60232 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SSSCA1O60232 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SSSCA1O60232 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SSSCA1O60232 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SSSCA1O60232 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SSSCA1O60232 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
SSSCA1O60232 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
SSSCA1O60232 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
SSSCA1O60232 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
SSSCA1O60232 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SSSCA1O60232 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
SSSCA1O60232 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSSCA1O60232 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SSSCA1O60232 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSSCA1O60232 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SSSCA1O60232 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC15.14■□□□□ 0.01
SSSCA1O60232 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
SSSCA1O60232 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSSCA1O60232 GNE-204ENST00000539208 2190 ntTSL 2 BASIC15.14■□□□□ 0.01
SSSCA1O60232 MTMR9LP-203ENST00000426597 1545 ntBASIC15.14■□□□□ 0.01
SSSCA1O60232 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC15.14■□□□□ 0.01
SSSCA1O60232 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
SSSCA1O60232 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC15.14■□□□□ 0.01
SSSCA1O60232 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC15.14■□□□□ 0.01
SSSCA1O60232 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC15.14■□□□□ 0.01
SSSCA1O60232 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSSCA1O60232 BX276092.2-201ENST00000417668 665 ntBASIC15.14■□□□□ 0.01
SSSCA1O60232 AC006015.1-201ENST00000429970 570 ntBASIC15.14■□□□□ 0.01
SSSCA1O60232 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SSSCA1O60232 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC15.14■□□□□ 0.01
SSSCA1O60232 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSSCA1O60232 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
SSSCA1O60232 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC15.14■□□□□ 0.01
SSSCA1O60232 REXO1L9P-201ENST00000604264 2108 ntBASIC15.14■□□□□ 0.01
SSSCA1O60232 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
SSSCA1O60232 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
SSSCA1O60232 AC093677.2-201ENST00000600169 1863 ntBASIC15.14■□□□□ 0.01
SSSCA1O60232 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC15.14■□□□□ 0.01
SSSCA1O60232 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC15.14■□□□□ 0.01
SSSCA1O60232 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSSCA1O60232 KATNBL1P6-202ENST00000562413 1466 ntBASIC15.14■□□□□ 0.01
SSSCA1O60232 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSSCA1O60232 SIRPAP1-201ENST00000448467 1770 ntBASIC15.13■□□□□ 0.01
SSSCA1O60232 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
SSSCA1O60232 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
SSSCA1O60232 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
SSSCA1O60232 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
SSSCA1O60232 NFYC-AS1-201ENST00000606277 1687 ntBASIC15.13■□□□□ 0.01
SSSCA1O60232 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC15.13■□□□□ 0.01
SSSCA1O60232 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SSSCA1O60232 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SSSCA1O60232 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC15.13■□□□□ 0.01
SSSCA1O60232 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SSSCA1O60232 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC15.13■□□□□ 0.01
SSSCA1O60232 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC15.13■□□□□ 0.01
SSSCA1O60232 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
SSSCA1O60232 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SSSCA1O60232 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SSSCA1O60232 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
SSSCA1O60232 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC15.13■□□□□ 0.01
SSSCA1O60232 SLC25A6P5-201ENST00000435663 894 ntBASIC15.13■□□□□ 0.01
SSSCA1O60232 NME6-213ENST00000451657 871 ntTSL 2 BASIC15.13■□□□□ 0.01
SSSCA1O60232 RCC2P6-201ENST00000526625 1557 ntBASIC15.13■□□□□ 0.01
SSSCA1O60232 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
SSSCA1O60232 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC15.13■□□□□ 0.01
SSSCA1O60232 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC15.13■□□□□ 0.01
SSSCA1O60232 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
SSSCA1O60232 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC15.13■□□□□ 0.01
SSSCA1O60232 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SSSCA1O60232 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SSSCA1O60232 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SSSCA1O60232 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SSSCA1O60232 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SSSCA1O60232 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SSSCA1O60232 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SSSCA1O60232 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
SSSCA1O60232 AC012317.2-201ENST00000623305 2251 ntBASIC15.13■□□□□ 0.01
SSSCA1O60232 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SSSCA1O60232 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SSSCA1O60232 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
SSSCA1O60232 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC15.12■□□□□ 0.01
SSSCA1O60232 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.12■□□□□ 0.01
SSSCA1O60232 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
SSSCA1O60232 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SSSCA1O60232 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC15.12■□□□□ 0.01
SSSCA1O60232 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
SSSCA1O60232 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SSSCA1O60232 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SSSCA1O60232 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC15.12■□□□□ 0.01
SSSCA1O60232 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
SSSCA1O60232 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
SSSCA1O60232 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SSSCA1O60232 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SSSCA1O60232 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.12■□□□□ 0.01
SSSCA1O60232 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC15.12■□□□□ 0.01
SSSCA1O60232 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SSSCA1O60232 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
SSSCA1O60232 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
SSSCA1O60232 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms