Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
CACNA1AO00555 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CACNA1AO00555 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CACNA1AO00555 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17.39■□□□□ 0.37
CACNA1AO00555 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CACNA1AO00555 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CACNA1AO00555 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CACNA1AO00555 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CACNA1AO00555 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC17.39■□□□□ 0.37
CACNA1AO00555 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.39■□□□□ 0.37
CACNA1AO00555 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC17.39■□□□□ 0.37
CACNA1AO00555 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CACNA1AO00555 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
CACNA1AO00555 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
CACNA1AO00555 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.38■□□□□ 0.37
CACNA1AO00555 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.38■□□□□ 0.37
CACNA1AO00555 GALC-202ENST00000393568 2054 ntTSL 2 BASIC17.38■□□□□ 0.37
CACNA1AO00555 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CACNA1AO00555 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.38■□□□□ 0.37
CACNA1AO00555 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CACNA1AO00555 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.38■□□□□ 0.37
CACNA1AO00555 UGT1A2P-201ENST00000454886 866 ntBASIC17.38■□□□□ 0.37
CACNA1AO00555 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CACNA1AO00555 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
CACNA1AO00555 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CACNA1AO00555 AC022145.2-201ENST00000598203 171 ntBASIC17.38■□□□□ 0.37
CACNA1AO00555 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CACNA1AO00555 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CACNA1AO00555 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CACNA1AO00555 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.38■□□□□ 0.37
CACNA1AO00555 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CACNA1AO00555 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CACNA1AO00555 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.38■□□□□ 0.37
CACNA1AO00555 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC17.38■□□□□ 0.37
CACNA1AO00555 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.38■□□□□ 0.37
CACNA1AO00555 VN2R19P-201ENST00000442399 1052 ntBASIC17.38■□□□□ 0.37
CACNA1AO00555 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CACNA1AO00555 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CACNA1AO00555 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC17.37■□□□□ 0.37
CACNA1AO00555 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
CACNA1AO00555 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.37■□□□□ 0.37
CACNA1AO00555 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CACNA1AO00555 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC17.37■□□□□ 0.37
CACNA1AO00555 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CACNA1AO00555 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
CACNA1AO00555 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.37■□□□□ 0.37
CACNA1AO00555 NME6-203ENST00000415644 849 ntTSL 2 BASIC17.37■□□□□ 0.37
CACNA1AO00555 AC027307.3-201ENST00000594262 1100 ntBASIC17.37■□□□□ 0.37
CACNA1AO00555 AL353135.1-201ENST00000606729 504 ntBASIC17.37■□□□□ 0.37
CACNA1AO00555 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CACNA1AO00555 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC17.37■□□□□ 0.37
CACNA1AO00555 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CACNA1AO00555 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CACNA1AO00555 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CACNA1AO00555 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC17.37■□□□□ 0.37
CACNA1AO00555 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CACNA1AO00555 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CACNA1AO00555 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CACNA1AO00555 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CACNA1AO00555 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CACNA1AO00555 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC17.37■□□□□ 0.37
CACNA1AO00555 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CACNA1AO00555 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CACNA1AO00555 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CACNA1AO00555 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC17.37■□□□□ 0.37
CACNA1AO00555 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.37■□□□□ 0.37
CACNA1AO00555 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.37■□□□□ 0.37
CACNA1AO00555 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.37■□□□□ 0.37
CACNA1AO00555 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC17.36■□□□□ 0.37
CACNA1AO00555 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.36■□□□□ 0.37
CACNA1AO00555 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
CACNA1AO00555 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CACNA1AO00555 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CACNA1AO00555 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CACNA1AO00555 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.36■□□□□ 0.37
CACNA1AO00555 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CACNA1AO00555 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
CACNA1AO00555 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.36■□□□□ 0.37
CACNA1AO00555 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.36■□□□□ 0.37
CACNA1AO00555 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CACNA1AO00555 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CACNA1AO00555 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CACNA1AO00555 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CACNA1AO00555 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.36■□□□□ 0.37
CACNA1AO00555 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CACNA1AO00555 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CACNA1AO00555 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CACNA1AO00555 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CACNA1AO00555 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.36■□□□□ 0.37
CACNA1AO00555 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CACNA1AO00555 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CACNA1AO00555 AC004461.1-201ENST00000412461 403 ntBASIC17.36■□□□□ 0.37
CACNA1AO00555 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.36■□□□□ 0.37
CACNA1AO00555 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CACNA1AO00555 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.36■□□□□ 0.37
CACNA1AO00555 AC010336.2-201ENST00000564226 506 ntBASIC17.36■□□□□ 0.37
CACNA1AO00555 SRP9-204ENST00000619790 377 ntTSL 2 BASIC17.36■□□□□ 0.37
CACNA1AO00555 PGM5P2-202ENST00000637225 1043 ntBASIC17.36■□□□□ 0.37
CACNA1AO00555 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
CACNA1AO00555 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms