Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CBX4O00257 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CBX4O00257 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CBX4O00257 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CBX4O00257 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.95■□□□□ 0.62
CBX4O00257 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CBX4O00257 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CBX4O00257 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
CBX4O00257 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CBX4O00257 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CBX4O00257 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.95■□□□□ 0.62
CBX4O00257 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CBX4O00257 STARP1-201ENST00000397973 869 ntBASIC18.95■□□□□ 0.62
CBX4O00257 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CBX4O00257 AL031133.1-201ENST00000406807 723 ntBASIC18.95■□□□□ 0.62
CBX4O00257 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.95■□□□□ 0.62
CBX4O00257 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CBX4O00257 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.95■□□□□ 0.62
CBX4O00257 KRT18P38-201ENST00000449496 1282 ntBASIC18.95■□□□□ 0.62
CBX4O00257 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CBX4O00257 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CBX4O00257 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.95■□□□□ 0.62
CBX4O00257 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.95■□□□□ 0.62
CBX4O00257 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CBX4O00257 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.95■□□□□ 0.62
CBX4O00257 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.95■□□□□ 0.62
CBX4O00257 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CBX4O00257 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CBX4O00257 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.95■□□□□ 0.62
CBX4O00257 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.95■□□□□ 0.62
CBX4O00257 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.94■□□□□ 0.62
CBX4O00257 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
CBX4O00257 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
CBX4O00257 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CBX4O00257 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
CBX4O00257 HCG11-201ENST00000411553 5696 ntBASIC18.94■□□□□ 0.62
CBX4O00257 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.94■□□□□ 0.62
CBX4O00257 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CBX4O00257 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CBX4O00257 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
CBX4O00257 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CBX4O00257 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CBX4O00257 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.94■□□□□ 0.62
CBX4O00257 SPDYE15P-201ENST00000424157 909 ntBASIC18.94■□□□□ 0.62
CBX4O00257 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.94■□□□□ 0.62
CBX4O00257 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.94■□□□□ 0.62
CBX4O00257 AC104390.1-201ENST00000555663 520 ntBASIC18.94■□□□□ 0.62
CBX4O00257 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.94■□□□□ 0.62
CBX4O00257 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CBX4O00257 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.94■□□□□ 0.62
CBX4O00257 AL121894.2-201ENST00000602977 491 ntBASIC18.94■□□□□ 0.62
CBX4O00257 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.94■□□□□ 0.62
CBX4O00257 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.94■□□□□ 0.62
CBX4O00257 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.94■□□□□ 0.62
CBX4O00257 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CBX4O00257 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.94■□□□□ 0.62
CBX4O00257 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
CBX4O00257 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.94■□□□□ 0.62
CBX4O00257 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.94■□□□□ 0.62
CBX4O00257 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.93■□□□□ 0.62
CBX4O00257 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CBX4O00257 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
CBX4O00257 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CBX4O00257 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CBX4O00257 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
CBX4O00257 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CBX4O00257 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CBX4O00257 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CBX4O00257 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CBX4O00257 RASA4DP-201ENST00000460726 1199 ntBASIC18.93■□□□□ 0.62
CBX4O00257 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.93■□□□□ 0.62
CBX4O00257 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.93■□□□□ 0.62
CBX4O00257 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.93■□□□□ 0.62
CBX4O00257 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.93■□□□□ 0.62
CBX4O00257 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.93■□□□□ 0.62
CBX4O00257 AC010240.3-201ENST00000607688 395 ntBASIC18.93■□□□□ 0.62
CBX4O00257 AC091076.1-201ENST00000610741 619 ntBASIC18.93■□□□□ 0.62
CBX4O00257 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.93■□□□□ 0.62
CBX4O00257 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CBX4O00257 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.93■□□□□ 0.62
CBX4O00257 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.93■□□□□ 0.62
CBX4O00257 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
CBX4O00257 AL499627.1-201ENST00000569373 2188 ntBASIC18.93■□□□□ 0.62
CBX4O00257 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.93■□□□□ 0.62
CBX4O00257 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CBX4O00257 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CBX4O00257 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.93■□□□□ 0.62
CBX4O00257 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CBX4O00257 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CBX4O00257 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.93■□□□□ 0.62
CBX4O00257 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CBX4O00257 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CBX4O00257 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CBX4O00257 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.92■□□□□ 0.62
CBX4O00257 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.92■□□□□ 0.62
CBX4O00257 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.92■□□□□ 0.62
CBX4O00257 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CBX4O00257 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC18.92■□□□□ 0.62
CBX4O00257 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CBX4O00257 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms