Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC188H7C350 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC188H7C350 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CCDC188H7C350 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CCDC188H7C350 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC19.31■□□□□ 0.68
CCDC188H7C350 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC188H7C350 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC188H7C350 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC188H7C350 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC188H7C350 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.31■□□□□ 0.68
CCDC188H7C350 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.31■□□□□ 0.68
CCDC188H7C350 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
CCDC188H7C350 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC188H7C350 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC188H7C350 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC188H7C350 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.31■□□□□ 0.68
CCDC188H7C350 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC188H7C350 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC188H7C350 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC188H7C350 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC188H7C350 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC188H7C350 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC188H7C350 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CCDC188H7C350 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC188H7C350 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC188H7C350 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CCDC188H7C350 RCC2P3-201ENST00000418112 1537 ntBASIC19.3■□□□□ 0.68
CCDC188H7C350 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC188H7C350 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC188H7C350 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC188H7C350 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC19.3■□□□□ 0.68
CCDC188H7C350 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CCDC188H7C350 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
CCDC188H7C350 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC188H7C350 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CCDC188H7C350 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CCDC188H7C350 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC188H7C350 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC188H7C350 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC188H7C350 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC188H7C350 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CCDC188H7C350 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC188H7C350 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC188H7C350 AL445675.2-201ENST00000620291 557 ntBASIC19.3■□□□□ 0.68
CCDC188H7C350 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC188H7C350 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CCDC188H7C350 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC188H7C350 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC188H7C350 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC188H7C350 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC188H7C350 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CCDC188H7C350 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.3■□□□□ 0.68
CCDC188H7C350 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC188H7C350 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC188H7C350 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC188H7C350 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC188H7C350 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC188H7C350 EML3-212ENST00000494176 2901 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC188H7C350 EML3-216ENST00000529309 2909 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC188H7C350 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC188H7C350 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC188H7C350 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC188H7C350 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC188H7C350 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC188H7C350 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC188H7C350 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
CCDC188H7C350 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC188H7C350 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC188H7C350 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC188H7C350 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC188H7C350 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC188H7C350 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.29■□□□□ 0.68
CCDC188H7C350 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC188H7C350 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.29■□□□□ 0.68
CCDC188H7C350 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19.29■□□□□ 0.68
CCDC188H7C350 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.29■□□□□ 0.68
CCDC188H7C350 AC133041.1-202ENST00000642053 222 ntBASIC19.29■□□□□ 0.68
CCDC188H7C350 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC188H7C350 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CCDC188H7C350 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC188H7C350 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC188H7C350 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC188H7C350 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC188H7C350 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.29■□□□□ 0.68
CCDC188H7C350 CEP83-AS1-201ENST00000623122 2482 ntBASIC19.29■□□□□ 0.68
CCDC188H7C350 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
CCDC188H7C350 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC188H7C350 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC188H7C350 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC188H7C350 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC188H7C350 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC188H7C350 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC188H7C350 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC188H7C350 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CCDC188H7C350 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC188H7C350 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CCDC188H7C350 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC188H7C350 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.28■□□□□ 0.68
CCDC188H7C350 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC188H7C350 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms