Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 NF2-208ENST00000403435 2568 ntTSL 5 BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 KRT18P11-201ENST00000435214 1283 ntBASIC13.58□□□□□ -0.24
SMKR1H3BMG3 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 AC093787.1-201ENST00000450396 207 ntBASIC13.57□□□□□ -0.24
SMKR1H3BMG3 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 AC137761.2-201ENST00000561729 223 ntBASIC13.57□□□□□ -0.24
SMKR1H3BMG3 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 AC145350.3-201ENST00000569033 163 ntBASIC13.57□□□□□ -0.24
SMKR1H3BMG3 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 AC093677.2-201ENST00000600169 1863 ntBASIC13.57□□□□□ -0.24
SMKR1H3BMG3 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SMKR1H3BMG3 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 HEIH-201ENST00000623091 1652 ntBASIC13.56□□□□□ -0.24
SMKR1H3BMG3 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 GAS2L1P1-201ENST00000420145 1480 ntBASIC13.56□□□□□ -0.24
SMKR1H3BMG3 AC008894.3-201ENST00000624324 3103 ntBASIC13.56□□□□□ -0.24
SMKR1H3BMG3 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms