Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC16.67■□□□□ 0.26
COL6A6A6NMZ7 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A6A6NMZ7 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A6A6NMZ7 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A6A6NMZ7 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC16.67■□□□□ 0.26
COL6A6A6NMZ7 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.67■□□□□ 0.26
COL6A6A6NMZ7 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.67■□□□□ 0.26
COL6A6A6NMZ7 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.67■□□□□ 0.26
COL6A6A6NMZ7 UNC93B6-202ENST00000528242 690 ntBASIC16.67■□□□□ 0.26
COL6A6A6NMZ7 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.67■□□□□ 0.26
COL6A6A6NMZ7 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.67■□□□□ 0.26
COL6A6A6NMZ7 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A6A6NMZ7 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A6A6NMZ7 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A6A6NMZ7 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A6A6NMZ7 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A6A6NMZ7 PCDHAC2-203ENST00000615316 3011 ntBASIC16.67■□□□□ 0.26
COL6A6A6NMZ7 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 GAS2L1P1-201ENST00000420145 1480 ntBASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 AL512408.1-201ENST00000569378 2000 ntBASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 AL139288.1-201ENST00000623748 933 ntBASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A6A6NMZ7 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.65■□□□□ 0.26
COL6A6A6NMZ7 AC008556.1-201ENST00000610908 2040 ntBASIC16.64■□□□□ 0.26
COL6A6A6NMZ7 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 AC092910.1-201ENST00000482027 1129 ntBASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 ALG1L5P-201ENST00000482043 771 ntBASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A6A6NMZ7 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms