Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AKR1C7P-201ENST00000305623 895 ntBASIC19.35■□□□□ 0.69
LIMD1Q9UGP4 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC19.35■□□□□ 0.69
LIMD1Q9UGP4 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
LIMD1Q9UGP4 MIR574-201ENST00000385209 96 ntBASIC19.35■□□□□ 0.69
LIMD1Q9UGP4 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
LIMD1Q9UGP4 KRT18P23-201ENST00000435622 1283 ntBASIC19.35■□□□□ 0.69
LIMD1Q9UGP4 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.35■□□□□ 0.69
LIMD1Q9UGP4 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
LIMD1Q9UGP4 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC19.35■□□□□ 0.69
LIMD1Q9UGP4 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC19.35■□□□□ 0.69
LIMD1Q9UGP4 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.35■□□□□ 0.69
LIMD1Q9UGP4 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.35■□□□□ 0.69
LIMD1Q9UGP4 AL390719.2-201ENST00000606993 987 ntBASIC19.35■□□□□ 0.69
LIMD1Q9UGP4 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC19.35■□□□□ 0.69
LIMD1Q9UGP4 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMD1Q9UGP4 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
LIMD1Q9UGP4 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMD1Q9UGP4 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
LIMD1Q9UGP4 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMD1Q9UGP4 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMD1Q9UGP4 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
LIMD1Q9UGP4 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LIMD1Q9UGP4 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
LIMD1Q9UGP4 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 PMS2P1-201ENST00000431037 1228 ntBASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMD1Q9UGP4 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
LIMD1Q9UGP4 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
LIMD1Q9UGP4 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.33■□□□□ 0.69
LIMD1Q9UGP4 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC19.33■□□□□ 0.69
LIMD1Q9UGP4 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIMD1Q9UGP4 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.33■□□□□ 0.69
LIMD1Q9UGP4 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIMD1Q9UGP4 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIMD1Q9UGP4 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
LIMD1Q9UGP4 IGHV3-47-201ENST00000425060 335 ntBASIC19.33■□□□□ 0.68
LIMD1Q9UGP4 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC19.33■□□□□ 0.68
LIMD1Q9UGP4 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.33■□□□□ 0.68
LIMD1Q9UGP4 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC19.33■□□□□ 0.68
LIMD1Q9UGP4 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.33■□□□□ 0.68
LIMD1Q9UGP4 AC010240.3-201ENST00000607688 395 ntBASIC19.33■□□□□ 0.68
LIMD1Q9UGP4 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LIMD1Q9UGP4 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LIMD1Q9UGP4 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIMD1Q9UGP4 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
LIMD1Q9UGP4 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIMD1Q9UGP4 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.33■□□□□ 0.68
LIMD1Q9UGP4 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 IL9RP2-201ENST00000423948 1312 ntBASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 SAPCD2P3-201ENST00000455031 850 ntBASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 MOK-208ENST00000519058 917 ntTSL 2 BASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 AF238378.1-201ENST00000526806 358 ntBASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 AC104390.1-201ENST00000555663 520 ntBASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 AC064862.7-201ENST00000604520 867 ntBASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 AC124864.1-201ENST00000623408 392 ntBASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.32■□□□□ 0.68
LIMD1Q9UGP4 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms