Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 AC233702.5-201ENST00000584107 538 ntBASIC16.61■□□□□ 0.25
VSX1Q9NZR4 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 TBC1D3P2-202ENST00000577902 1649 ntBASIC16.6■□□□□ 0.25
VSX1Q9NZR4 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 ENSA-205ENST00000361532 792 ntTSL 2 BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 MFAP1P1-201ENST00000442257 1255 ntBASIC16.6■□□□□ 0.25
VSX1Q9NZR4 AL158047.1-201ENST00000445918 881 ntBASIC16.6■□□□□ 0.25
VSX1Q9NZR4 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 AC113410.3-201ENST00000623366 203 ntBASIC16.6■□□□□ 0.25
VSX1Q9NZR4 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VSX1Q9NZR4 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 ABALON-201ENST00000629058 1903 ntBASIC16.59■□□□□ 0.25
VSX1Q9NZR4 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 AC008556.1-201ENST00000610908 2040 ntBASIC16.59■□□□□ 0.25
VSX1Q9NZR4 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 CA15P1-201ENST00000481698 905 ntBASIC16.59■□□□□ 0.25
VSX1Q9NZR4 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 SLC25A1P4-201ENST00000567977 778 ntBASIC16.59■□□□□ 0.25
VSX1Q9NZR4 AL049637.2-201ENST00000641778 930 ntBASIC16.59■□□□□ 0.25
VSX1Q9NZR4 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.59■□□□□ 0.25
VSX1Q9NZR4 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC16.58■□□□□ 0.25
VSX1Q9NZR4 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VSX1Q9NZR4 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
VSX1Q9NZR4 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VSX1Q9NZR4 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
VSX1Q9NZR4 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.58■□□□□ 0.25
VSX1Q9NZR4 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
VSX1Q9NZR4 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 AL023284.2-201ENST00000405850 579 ntBASIC16.58■□□□□ 0.24
VSX1Q9NZR4 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC16.58■□□□□ 0.24
VSX1Q9NZR4 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms