Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCAL1Q9NZC9 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCAL1Q9NZC9 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCAL1Q9NZC9 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCAL1Q9NZC9 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC19.57■□□□□ 0.72
SMARCAL1Q9NZC9 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
SMARCAL1Q9NZC9 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCAL1Q9NZC9 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCAL1Q9NZC9 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC19.57■□□□□ 0.72
SMARCAL1Q9NZC9 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCAL1Q9NZC9 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCAL1Q9NZC9 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCAL1Q9NZC9 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCAL1Q9NZC9 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCAL1Q9NZC9 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.57■□□□□ 0.72
SMARCAL1Q9NZC9 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.57■□□□□ 0.72
SMARCAL1Q9NZC9 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.57■□□□□ 0.72
SMARCAL1Q9NZC9 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCAL1Q9NZC9 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SMARCAL1Q9NZC9 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCAL1Q9NZC9 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC19.56■□□□□ 0.72
SMARCAL1Q9NZC9 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SMARCAL1Q9NZC9 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SMARCAL1Q9NZC9 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SMARCAL1Q9NZC9 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
SMARCAL1Q9NZC9 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMARCAL1Q9NZC9 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SMARCAL1Q9NZC9 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.56■□□□□ 0.72
SMARCAL1Q9NZC9 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMARCAL1Q9NZC9 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SMARCAL1Q9NZC9 AC008403.3-201ENST00000598924 454 ntBASIC19.56■□□□□ 0.72
SMARCAL1Q9NZC9 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19.56■□□□□ 0.72
SMARCAL1Q9NZC9 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMARCAL1Q9NZC9 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.56■□□□□ 0.72
SMARCAL1Q9NZC9 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMARCAL1Q9NZC9 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.56■□□□□ 0.72
SMARCAL1Q9NZC9 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMARCAL1Q9NZC9 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
SMARCAL1Q9NZC9 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC19.56■□□□□ 0.72
SMARCAL1Q9NZC9 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC19.56■□□□□ 0.72
SMARCAL1Q9NZC9 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMARCAL1Q9NZC9 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
SMARCAL1Q9NZC9 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC19.56■□□□□ 0.72
SMARCAL1Q9NZC9 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 POM121L13P-201ENST00000422362 380 ntBASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 AC026366.1-201ENST00000488803 879 ntBASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
SMARCAL1Q9NZC9 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 AC080080.1-201ENST00000625121 2420 ntBASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 AC099343.3-201ENST00000605834 2503 ntBASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 AC138028.4-201ENST00000564984 1845 ntBASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 ESRRAP1-201ENST00000400596 1257 ntBASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCAL1Q9NZC9 MMAB-206ENST00000540016 945 ntTSL 3 BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms