Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 LETM1P2-201ENST00000597330 2178 ntBASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 Z98044.1-201ENST00000632503 1764 ntBASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 KRT18P23-201ENST00000435622 1283 ntBASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 HOMER2P1-201ENST00000455653 964 ntBASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 LINC01238-205ENST00000567549 1107 ntBASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 AC024243.1-201ENST00000609234 778 ntBASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.41■□□□□ 0.54
TRIM39Q9HCM9 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 AC120498.9-201ENST00000339021 3867 ntBASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 FAM8A6P-201ENST00000407496 1135 ntBASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 AC022616.7-201ENST00000525383 220 ntBASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.4■□□□□ 0.54
TRIM39Q9HCM9 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
TRIM39Q9HCM9 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TRIM39Q9HCM9 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TRIM39Q9HCM9 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
TRIM39Q9HCM9 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM39Q9HCM9 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms