Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.33■□□□□ 0.52
VPS13AQ96RL7 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS13AQ96RL7 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
VPS13AQ96RL7 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS13AQ96RL7 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 MIR1199-201ENST00000621445 119 ntBASIC18.32■□□□□ 0.52
VPS13AQ96RL7 AL512353.2-201ENST00000448759 1962 ntBASIC18.32■□□□□ 0.52
VPS13AQ96RL7 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 WDR53-203ENST00000429115 683 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 INO80C-206ENST00000586489 594 ntTSL 3 BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 Z83851.2-201ENST00000609564 659 ntBASIC18.32■□□□□ 0.52
VPS13AQ96RL7 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.32■□□□□ 0.52
VPS13AQ96RL7 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS13AQ96RL7 AC009237.14-201ENST00000609975 1594 ntBASIC18.32■□□□□ 0.52
VPS13AQ96RL7 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 MED16-201ENST00000269814 1199 ntTSL 5 BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 AC011840.4-201ENST00000578471 627 ntBASIC18.31■□□□□ 0.52
VPS13AQ96RL7 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 AL353692.3-201ENST00000407031 1396 ntBASIC18.31■□□□□ 0.52
VPS13AQ96RL7 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 MIR4469-201ENST00000583919 79 ntBASIC18.31■□□□□ 0.52
VPS13AQ96RL7 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS13AQ96RL7 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS13AQ96RL7 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS13AQ96RL7 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC18.3■□□□□ 0.52
VPS13AQ96RL7 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS13AQ96RL7 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS13AQ96RL7 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS13AQ96RL7 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
VPS13AQ96RL7 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS13AQ96RL7 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS13AQ96RL7 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS13AQ96RL7 AP003733.1-201ENST00000491725 852 ntBASIC18.3■□□□□ 0.52
VPS13AQ96RL7 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC18.3■□□□□ 0.52
VPS13AQ96RL7 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
VPS13AQ96RL7 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS13AQ96RL7 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC18.3■□□□□ 0.52
VPS13AQ96RL7 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
VPS13AQ96RL7 PNMT-202ENST00000394246 821 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS13AQ96RL7 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VPS13AQ96RL7 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS13AQ96RL7 AC021087.4-201ENST00000563761 564 ntBASIC18.3■□□□□ 0.52
VPS13AQ96RL7 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS13AQ96RL7 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.3■□□□□ 0.52
VPS13AQ96RL7 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC18.3■□□□□ 0.52
VPS13AQ96RL7 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
VPS13AQ96RL7 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
VPS13AQ96RL7 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS13AQ96RL7 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS13AQ96RL7 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms