Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
CCDC42Q96M95 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC42Q96M95 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC42Q96M95 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC42Q96M95 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC42Q96M95 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC42Q96M95 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC42Q96M95 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC42Q96M95 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
CCDC42Q96M95 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.07■□□□□ 0.8
CCDC42Q96M95 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC42Q96M95 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC42Q96M95 RNA5SP413-201ENST00000516373 109 ntBASIC20.07■□□□□ 0.8
CCDC42Q96M95 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.07■□□□□ 0.8
CCDC42Q96M95 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.07■□□□□ 0.8
CCDC42Q96M95 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CCDC42Q96M95 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC42Q96M95 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC20.07■□□□□ 0.8
CCDC42Q96M95 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC42Q96M95 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
CCDC42Q96M95 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC42Q96M95 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC42Q96M95 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
CCDC42Q96M95 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
CCDC42Q96M95 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC42Q96M95 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC20.06■□□□□ 0.8
CCDC42Q96M95 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
CCDC42Q96M95 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC42Q96M95 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC42Q96M95 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC42Q96M95 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CCDC42Q96M95 AC004980.1-204ENST00000429707 299 ntBASIC20.06■□□□□ 0.8
CCDC42Q96M95 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.06■□□□□ 0.8
CCDC42Q96M95 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
CCDC42Q96M95 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC20.06■□□□□ 0.8
CCDC42Q96M95 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.06■□□□□ 0.8
CCDC42Q96M95 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC42Q96M95 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC42Q96M95 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC42Q96M95 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC42Q96M95 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.06■□□□□ 0.8
CCDC42Q96M95 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC42Q96M95 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
CCDC42Q96M95 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC42Q96M95 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC42Q96M95 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC42Q96M95 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
CCDC42Q96M95 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC42Q96M95 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC42Q96M95 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC42Q96M95 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC42Q96M95 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CCDC42Q96M95 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.05■□□□□ 0.8
CCDC42Q96M95 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
CCDC42Q96M95 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC42Q96M95 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC42Q96M95 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.05■□□□□ 0.8
CCDC42Q96M95 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC42Q96M95 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.05■□□□□ 0.8
CCDC42Q96M95 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC42Q96M95 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CCDC42Q96M95 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC42Q96M95 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CCDC42Q96M95 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC42Q96M95 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC42Q96M95 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC42Q96M95 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC42Q96M95 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
CCDC42Q96M95 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC42Q96M95 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC42Q96M95 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC42Q96M95 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC42Q96M95 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC42Q96M95 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CCDC42Q96M95 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC42Q96M95 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CCDC42Q96M95 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC42Q96M95 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC42Q96M95 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC42Q96M95 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC42Q96M95 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CCDC42Q96M95 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC42Q96M95 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC42Q96M95 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC42Q96M95 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC42Q96M95 AC093677.2-201ENST00000600169 1863 ntBASIC20.04■□□□□ 0.8
CCDC42Q96M95 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC42Q96M95 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC42Q96M95 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC42Q96M95 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC42Q96M95 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC42Q96M95 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC42Q96M95 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC42Q96M95 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CCDC42Q96M95 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC42Q96M95 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
CCDC42Q96M95 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC42Q96M95 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC42Q96M95 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC42Q96M95 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms