Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
RTF1Q92541 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC24.22■■□□□ 1.47
RTF1Q92541 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RTF1Q92541 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC24.21■■□□□ 1.47
RTF1Q92541 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC24.21■■□□□ 1.47
RTF1Q92541 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RTF1Q92541 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RTF1Q92541 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RTF1Q92541 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC24.21■■□□□ 1.47
RTF1Q92541 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
RTF1Q92541 HCG4P8-203ENST00000443049 980 ntBASIC24.21■■□□□ 1.47
RTF1Q92541 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
RTF1Q92541 BX276092.5-203ENST00000456199 560 ntBASIC24.21■■□□□ 1.47
RTF1Q92541 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
RTF1Q92541 BCL10-202ENST00000620248 774 ntTSL 5 BASIC24.21■■□□□ 1.47
RTF1Q92541 WDR6-223ENST00000627177 207 ntTSL 2 BASIC24.21■■□□□ 1.47
RTF1Q92541 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RTF1Q92541 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC24.21■■□□□ 1.47
RTF1Q92541 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
RTF1Q92541 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC24.21■■□□□ 1.47
RTF1Q92541 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RTF1Q92541 AC120498.9-201ENST00000339021 3867 ntBASIC24.21■■□□□ 1.47
RTF1Q92541 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RTF1Q92541 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
RTF1Q92541 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC24.21■■□□□ 1.47
RTF1Q92541 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.47
RTF1Q92541 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
RTF1Q92541 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
RTF1Q92541 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
RTF1Q92541 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC24.2■■□□□ 1.46
RTF1Q92541 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC24.2■■□□□ 1.46
RTF1Q92541 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC24.2■■□□□ 1.46
RTF1Q92541 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC24.2■■□□□ 1.46
RTF1Q92541 AL121672.3-201ENST00000608644 468 ntBASIC24.2■■□□□ 1.46
RTF1Q92541 LITAF-220ENST00000620789 692 ntTSL 5 BASIC24.2■■□□□ 1.46
RTF1Q92541 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC24.2■■□□□ 1.46
RTF1Q92541 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC24.2■■□□□ 1.46
RTF1Q92541 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC24.2■■□□□ 1.46
RTF1Q92541 AC093525.10-201ENST00000625130 1569 ntBASIC24.2■■□□□ 1.46
RTF1Q92541 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
RTF1Q92541 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
RTF1Q92541 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
RTF1Q92541 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
RTF1Q92541 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC24.19■■□□□ 1.46
RTF1Q92541 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC24.19■■□□□ 1.46
RTF1Q92541 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC24.19■■□□□ 1.46
RTF1Q92541 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
RTF1Q92541 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC24.19■■□□□ 1.46
RTF1Q92541 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
RTF1Q92541 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
RTF1Q92541 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC24.19■■□□□ 1.46
RTF1Q92541 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC24.19■■□□□ 1.46
RTF1Q92541 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC24.19■■□□□ 1.46
RTF1Q92541 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
RTF1Q92541 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC24.19■■□□□ 1.46
RTF1Q92541 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
RTF1Q92541 SNAI3-AS1-205ENST00000568633 2096 ntBASIC24.19■■□□□ 1.46
RTF1Q92541 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
RTF1Q92541 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
RTF1Q92541 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
RTF1Q92541 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC24.18■■□□□ 1.46
RTF1Q92541 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
RTF1Q92541 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC24.18■■□□□ 1.46
RTF1Q92541 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
RTF1Q92541 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
RTF1Q92541 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
RTF1Q92541 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
RTF1Q92541 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
RTF1Q92541 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC24.18■■□□□ 1.46
RTF1Q92541 ATP5G2P1-201ENST00000433580 426 ntBASIC24.18■■□□□ 1.46
RTF1Q92541 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
RTF1Q92541 REEP1-209ENST00000541910 969 ntTSL 2 BASIC24.18■■□□□ 1.46
RTF1Q92541 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC24.18■■□□□ 1.46
RTF1Q92541 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC24.18■■□□□ 1.46
RTF1Q92541 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC24.18■■□□□ 1.46
RTF1Q92541 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC24.18■■□□□ 1.46
RTF1Q92541 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
RTF1Q92541 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC24.18■■□□□ 1.46
RTF1Q92541 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
RTF1Q92541 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC24.18■■□□□ 1.46
RTF1Q92541 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
RTF1Q92541 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
RTF1Q92541 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
RTF1Q92541 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
RTF1Q92541 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
RTF1Q92541 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
RTF1Q92541 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
RTF1Q92541 AL163051.1-201ENST00000569214 1512 ntBASIC24.17■■□□□ 1.46
RTF1Q92541 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
RTF1Q92541 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
RTF1Q92541 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
RTF1Q92541 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC24.17■■□□□ 1.46
RTF1Q92541 TSSC2-201ENST00000450217 709 ntBASIC24.17■■□□□ 1.46
RTF1Q92541 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC24.17■■□□□ 1.46
RTF1Q92541 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC24.17■■□□□ 1.46
RTF1Q92541 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC24.17■■□□□ 1.46
RTF1Q92541 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
RTF1Q92541 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
RTF1Q92541 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
RTF1Q92541 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms