Protein–RNA interactions for Protein: Q8TD47

RPS4Y2, 40S ribosomal protein S4, Y isoform 2, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS4Y2Q8TD47 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 ABHD17AP1-201ENST00000358206 933 ntBASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 DERL1-203ENST00000419562 918 ntTSL 2 BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 KRT16P5-201ENST00000455284 522 ntBASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 MIR4651-201ENST00000582622 73 ntBASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 AC069544.1-201ENST00000609399 999 ntBASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RPS4Y2Q8TD47 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
RPS4Y2Q8TD47 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
RPS4Y2Q8TD47 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RPS4Y2Q8TD47 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RPS4Y2Q8TD47 REXO1L9P-201ENST00000604264 2108 ntBASIC16.27■□□□□ 0.19
RPS4Y2Q8TD47 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
RPS4Y2Q8TD47 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RPS4Y2Q8TD47 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RPS4Y2Q8TD47 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 AL109659.2-201ENST00000606809 1674 ntBASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 ESRRAP1-201ENST00000400596 1257 ntBASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 AC091390.4-202ENST00000476426 537 ntBASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 AP003097.1-201ENST00000530657 1135 ntBASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 IRX5-204ENST00000560154 879 ntTSL 5 BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RPS4Y2Q8TD47 AC131212.4-201ENST00000623606 975 ntBASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms