Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 KRT16P6-202ENST00000425692 1426 ntBASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 MIR3181-201ENST00000578512 73 ntBASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN3Q8NCR9 PCDHA14-201ENST00000506751 2298 ntBASIC14.83□□□□□ -0.03
CLRN3Q8NCR9 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC14.83□□□□□ -0.03
CLRN3Q8NCR9 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC14.83□□□□□ -0.03
CLRN3Q8NCR9 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CLRN3Q8NCR9 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
CLRN3Q8NCR9 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
CLRN3Q8NCR9 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
CLRN3Q8NCR9 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
CLRN3Q8NCR9 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC14.83□□□□□ -0.03
CLRN3Q8NCR9 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC14.83□□□□□ -0.03
CLRN3Q8NCR9 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CLRN3Q8NCR9 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CLRN3Q8NCR9 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 AL356441.2-201ENST00000443009 864 ntBASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 COBL-210ENST00000632460 1941 ntTSL 5 BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 GCK-209ENST00000616242 2260 ntTSL 5 BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 HARS-201ENST00000307633 1780 ntTSL 2 BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLRN3Q8NCR9 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 PTPA-214ENST00000423100 988 ntTSL 2 BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
CLRN3Q8NCR9 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms