Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
USHBP1Q8N6Y0 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
USHBP1Q8N6Y0 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
USHBP1Q8N6Y0 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC24.47■■□□□ 1.51
USHBP1Q8N6Y0 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
USHBP1Q8N6Y0 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
USHBP1Q8N6Y0 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
USHBP1Q8N6Y0 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
USHBP1Q8N6Y0 AL022342.1-201ENST00000400363 863 ntBASIC24.47■■□□□ 1.51
USHBP1Q8N6Y0 NUS1P2-201ENST00000417358 873 ntBASIC24.47■■□□□ 1.51
USHBP1Q8N6Y0 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC24.47■■□□□ 1.51
USHBP1Q8N6Y0 TSPY12P-201ENST00000421279 868 ntBASIC24.47■■□□□ 1.51
USHBP1Q8N6Y0 PPOX-214ENST00000535223 664 ntTSL 3 BASIC24.47■■□□□ 1.51
USHBP1Q8N6Y0 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC24.47■■□□□ 1.51
USHBP1Q8N6Y0 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC24.47■■□□□ 1.51
USHBP1Q8N6Y0 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
USHBP1Q8N6Y0 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
USHBP1Q8N6Y0 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC24.47■■□□□ 1.51
USHBP1Q8N6Y0 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
USHBP1Q8N6Y0 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
USHBP1Q8N6Y0 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC24.46■■□□□ 1.51
USHBP1Q8N6Y0 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC24.46■■□□□ 1.51
USHBP1Q8N6Y0 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
USHBP1Q8N6Y0 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
USHBP1Q8N6Y0 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC24.46■■□□□ 1.51
USHBP1Q8N6Y0 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC24.46■■□□□ 1.51
USHBP1Q8N6Y0 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC24.46■■□□□ 1.51
USHBP1Q8N6Y0 GUSBP12-201ENST00000513727 720 ntBASIC24.46■■□□□ 1.51
USHBP1Q8N6Y0 FICD-205ENST00000552758 603 ntTSL 2 BASIC24.46■■□□□ 1.51
USHBP1Q8N6Y0 AC004263.2-201ENST00000617183 678 ntBASIC24.46■■□□□ 1.51
USHBP1Q8N6Y0 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
USHBP1Q8N6Y0 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC24.46■■□□□ 1.51
USHBP1Q8N6Y0 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC24.46■■□□□ 1.51
USHBP1Q8N6Y0 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
USHBP1Q8N6Y0 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
USHBP1Q8N6Y0 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
USHBP1Q8N6Y0 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 TPM1-218ENST00000559281 851 ntTSL 5 BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 LINC01711-201ENST00000598340 967 ntBASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 AL121912.1-201ENST00000603683 238 ntBASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
USHBP1Q8N6Y0 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC24.44■■□□□ 1.5
USHBP1Q8N6Y0 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
USHBP1Q8N6Y0 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
USHBP1Q8N6Y0 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC24.44■■□□□ 1.5
USHBP1Q8N6Y0 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
USHBP1Q8N6Y0 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC24.44■■□□□ 1.5
USHBP1Q8N6Y0 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
USHBP1Q8N6Y0 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC24.44■■□□□ 1.5
USHBP1Q8N6Y0 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
USHBP1Q8N6Y0 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
USHBP1Q8N6Y0 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC24.44■■□□□ 1.5
USHBP1Q8N6Y0 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
USHBP1Q8N6Y0 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC24.44■■□□□ 1.5
USHBP1Q8N6Y0 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
USHBP1Q8N6Y0 CALM3-211ENST00000598871 561 ntTSL 4 BASIC24.44■■□□□ 1.5
USHBP1Q8N6Y0 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
USHBP1Q8N6Y0 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC24.44■■□□□ 1.5
USHBP1Q8N6Y0 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC24.44■■□□□ 1.5
USHBP1Q8N6Y0 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
USHBP1Q8N6Y0 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC24.43■■□□□ 1.5
USHBP1Q8N6Y0 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
USHBP1Q8N6Y0 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
USHBP1Q8N6Y0 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
USHBP1Q8N6Y0 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
USHBP1Q8N6Y0 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC24.43■■□□□ 1.5
USHBP1Q8N6Y0 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
USHBP1Q8N6Y0 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC24.43■■□□□ 1.5
USHBP1Q8N6Y0 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
USHBP1Q8N6Y0 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
USHBP1Q8N6Y0 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
USHBP1Q8N6Y0 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
USHBP1Q8N6Y0 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC24.43■■□□□ 1.5
USHBP1Q8N6Y0 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC24.43■■□□□ 1.5
USHBP1Q8N6Y0 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC24.43■■□□□ 1.5
USHBP1Q8N6Y0 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC24.43■■□□□ 1.5
USHBP1Q8N6Y0 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms