Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.14■□□□□ 0.33
C9orf40Q8IXQ3 AL445228.2-201ENST00000605589 952 ntBASIC17.14■□□□□ 0.33
C9orf40Q8IXQ3 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
C9orf40Q8IXQ3 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
C9orf40Q8IXQ3 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
C9orf40Q8IXQ3 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
C9orf40Q8IXQ3 AC004408.2-201ENST00000623613 2777 ntBASIC17.14■□□□□ 0.33
C9orf40Q8IXQ3 MYLKP1-201ENST00000509077 1580 ntBASIC17.14■□□□□ 0.33
C9orf40Q8IXQ3 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.14■□□□□ 0.33
C9orf40Q8IXQ3 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
C9orf40Q8IXQ3 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
C9orf40Q8IXQ3 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
C9orf40Q8IXQ3 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
C9orf40Q8IXQ3 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.14■□□□□ 0.33
C9orf40Q8IXQ3 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
C9orf40Q8IXQ3 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
C9orf40Q8IXQ3 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.14■□□□□ 0.33
C9orf40Q8IXQ3 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 AC112907.2-201ENST00000448639 330 ntBASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 MIR3180-4-201ENST00000582223 153 ntBASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
C9orf40Q8IXQ3 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 AL163051.1-201ENST00000569214 1512 ntBASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 AC099343.3-201ENST00000605834 2503 ntBASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 AC005082.1-201ENST00000413042 2259 ntBASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC17.12■□□□□ 0.33
C9orf40Q8IXQ3 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 AL671277.2-201ENST00000458060 996 ntBASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 AC092597.1-201ENST00000487352 616 ntBASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 HYMAI.1-201ENST00000620949 238 ntBASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 AC079602.3-201ENST00000623931 403 ntBASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 AC126763.1-201ENST00000552015 2118 ntBASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
C9orf40Q8IXQ3 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.1■□□□□ 0.33
C9orf40Q8IXQ3 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
C9orf40Q8IXQ3 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms