Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MIR2861-201ENST00000636310 90 ntBASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 NARF-204ENST00000390006 1766 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 SLC25A6P5-201ENST00000435663 894 ntBASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 AC142381.2-201ENST00000566120 298 ntBASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 AC105233.4-201ENST00000642045 216 ntBASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 AC005224.4-201ENST00000583262 1652 ntBASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC15.53■□□□□ 0.08
CCDC28AQ8IWP9 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC15.52■□□□□ 0.08
CCDC28AQ8IWP9 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CCDC28AQ8IWP9 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.52■□□□□ 0.07
CCDC28AQ8IWP9 AC061975.6-201ENST00000579045 1553 ntBASIC15.52■□□□□ 0.07
CCDC28AQ8IWP9 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CCDC28AQ8IWP9 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
CCDC28AQ8IWP9 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC15.52■□□□□ 0.07
CCDC28AQ8IWP9 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CCDC28AQ8IWP9 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC15.52■□□□□ 0.07
CCDC28AQ8IWP9 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.52■□□□□ 0.07
CCDC28AQ8IWP9 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.52■□□□□ 0.07
CCDC28AQ8IWP9 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC15.51■□□□□ 0.07
CCDC28AQ8IWP9 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms