Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC026691.1-201ENST00000602502 2017 ntBASIC11.62□□□□□ -0.55
LINC00643Q86TS7 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 AC116050.2-201ENST00000612102 1779 ntBASIC11.62□□□□□ -0.55
LINC00643Q86TS7 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 CES3-203ENST00000543856 3178 ntTSL 2 BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 LINC02228-204ENST00000642115 2962 ntBASIC11.61□□□□□ -0.55
LINC00643Q86TS7 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 STX4-202ENST00000394998 1498 ntTSL 2 BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 BANP-204ENST00000393208 2283 ntTSL 2 BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00643Q86TS7 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 IDNK-203ENST00000405990 629 ntTSL 2 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms