Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.01■□□□□ 0.47
FOXA1P55317 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.01■□□□□ 0.47
FOXA1P55317 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA1P55317 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.01■□□□□ 0.47
FOXA1P55317 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
FOXA1P55317 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA1P55317 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA1P55317 AC099343.3-201ENST00000605834 2503 ntBASIC18.01■□□□□ 0.47
FOXA1P55317 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA1P55317 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.01■□□□□ 0.47
FOXA1P55317 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.01■□□□□ 0.47
FOXA1P55317 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA1P55317 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.01■□□□□ 0.47
FOXA1P55317 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
FOXA1P55317 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18■□□□□ 0.47
FOXA1P55317 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18■□□□□ 0.47
FOXA1P55317 AL109659.2-201ENST00000606809 1674 ntBASIC18■□□□□ 0.47
FOXA1P55317 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18■□□□□ 0.47
FOXA1P55317 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18■□□□□ 0.47
FOXA1P55317 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
FOXA1P55317 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
FOXA1P55317 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18■□□□□ 0.47
FOXA1P55317 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
FOXA1P55317 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
FOXA1P55317 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
FOXA1P55317 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18■□□□□ 0.47
FOXA1P55317 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18■□□□□ 0.47
FOXA1P55317 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18■□□□□ 0.47
FOXA1P55317 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18■□□□□ 0.47
FOXA1P55317 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18■□□□□ 0.47
FOXA1P55317 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18■□□□□ 0.47
FOXA1P55317 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18■□□□□ 0.47
FOXA1P55317 AP000692.2-201ENST00000608391 879 ntBASIC18■□□□□ 0.47
FOXA1P55317 FAM197Y4-202ENST00000622692 608 ntBASIC18■□□□□ 0.47
FOXA1P55317 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18■□□□□ 0.47
FOXA1P55317 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
FOXA1P55317 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18■□□□□ 0.47
FOXA1P55317 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18■□□□□ 0.47
FOXA1P55317 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18■□□□□ 0.47
FOXA1P55317 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18■□□□□ 0.47
FOXA1P55317 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
FOXA1P55317 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
FOXA1P55317 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
FOXA1P55317 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
FOXA1P55317 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18■□□□□ 0.47
FOXA1P55317 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
FOXA1P55317 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
FOXA1P55317 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
FOXA1P55317 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.99■□□□□ 0.47
FOXA1P55317 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
FOXA1P55317 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
FOXA1P55317 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
FOXA1P55317 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.99■□□□□ 0.47
FOXA1P55317 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.99■□□□□ 0.47
FOXA1P55317 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
FOXA1P55317 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
FOXA1P55317 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.99■□□□□ 0.47
FOXA1P55317 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
FOXA1P55317 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.99■□□□□ 0.47
FOXA1P55317 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
FOXA1P55317 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
FOXA1P55317 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.99■□□□□ 0.47
FOXA1P55317 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
FOXA1P55317 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.99■□□□□ 0.47
FOXA1P55317 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.99■□□□□ 0.47
FOXA1P55317 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
FOXA1P55317 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
FOXA1P55317 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
FOXA1P55317 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
FOXA1P55317 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
FOXA1P55317 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
FOXA1P55317 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
FOXA1P55317 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
FOXA1P55317 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
FOXA1P55317 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
FOXA1P55317 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA1P55317 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA1P55317 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
FOXA1P55317 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.98■□□□□ 0.47
FOXA1P55317 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA1P55317 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.98■□□□□ 0.47
FOXA1P55317 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
FOXA1P55317 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.98■□□□□ 0.47
FOXA1P55317 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA1P55317 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.98■□□□□ 0.47
FOXA1P55317 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.98■□□□□ 0.47
FOXA1P55317 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.98■□□□□ 0.47
FOXA1P55317 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.98■□□□□ 0.47
FOXA1P55317 FSCN1P1-201ENST00000568912 1481 ntBASIC17.98■□□□□ 0.47
FOXA1P55317 GPAT2P1-201ENST00000444924 1672 ntBASIC17.98■□□□□ 0.47
FOXA1P55317 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA1P55317 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA1P55317 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
FOXA1P55317 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA1P55317 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.98■□□□□ 0.47
FOXA1P55317 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA1P55317 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA1P55317 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.98■□□□□ 0.47
FOXA1P55317 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC17.98■□□□□ 0.47
FOXA1P55317 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms